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Detailed information on CNT30643000


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40281|RCA_MALDO, E-value = 1e-38

BLAST vs NONCODE:
NONTCAT000366, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698101Cannabis sativaQuercus lobata84.834.2579.72212forward
CNT30379330Cannabis sativaManihot esculenta94.846.8487.34237forward
CNT3097189Cannabis sativaSolanum tuberosum47.215.7584.75118forward
CNT30562839Cannabis sativaActinidia chinensis60.824.1781.58152forward
CNT30171766Cannabis sativaTrifolium pratense76.422.8286.39191forward
CNT30144552Cannabis sativaMedicago truncatula57.626.8283.33144forward
CNT30309961Cannabis sativaCamelina sativa47.620.5583.19119forward
CNT3060875Cannabis sativaArabidopsis lyrata22.812.987.7257forward
CNT3074932Cannabis sativaBrassica juncea47.637.6682.35119forward
CNT30261873Cannabis sativaBrassica rapa48.843.7384.43122forward
CNT3068390Cannabis sativaLeersia perrieri74.435.1684.41186forward
CNT30683688Cannabis sativaTriticum urartu30.416.8584.2176forward
CNT30365435Cannabis sativaSorghum bicolor49.616.1780.65124forward
CNT30360641Cannabis sativaLactuca sativa58.429.1484.25146forward
CNT30151279Cannabis sativaBrachypodium distachyon5826.2782.07145forward
CNT30104149Cannabis sativaOryza rufipogon52.813.5583.33132forward
CNT30604795Cannabis sativaOryza punctata52.88.3583.33132forward

Expression of CNT30643000

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFPYSNSFSIVIFGCSNVGGPSLEFTSFFPMVSTP

>peptide 2 (82 aa)
LHINQRIKELTVETSTLNGIFVSLTKSSLAQVLVGQLNSLHVILLLHKHVSILQQLLNCHLWLLECWWSFSRVHKLLPNGFHS

Sequence

>CNT30643000
CTCCACATAAATCAAAGGATCAAGGAGCTAACCGTAGAAACTTCCACTCTTAATGGCATCTTCGTTAGCCTCACCAAGAGCAGCCTCGCTCAAGTACTTG
TCGGCCAACTGAACTCTCTTCACGTTATCTTGCTCTTGCACAAGCATGTTTCCATACTCCAACAGCTTCTCAATTGTCATCTTTGGTTGCTCGAATGTTG
GTGGTCCTTCTCTCGAGTTCACAAGCTTCTTCCCAATGGTTTCCACTCCC