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Detailed information on CNT30642718


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-151

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-119

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377890Cannabis sativaArabidopsis thaliana49.6272.0883.99581forward
CNT30636031Cannabis sativaCapsicum annuum56.0241.9284.15656forward

Expression of CNT30642718

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSLCWSGGIPSLSCILAFTLSMVSELSTSKVMVFPRGCDRPRAAFQRKSASADLGESPPCLGS*

Sequence

>CNT30642718
TTTACATTCTACCTTGATAGATGATATTTGATTAAATGAAATGATTCATTTTCATTCAAAAAAGTTGAAATAATAATATAATCAGAGCAACATTAAAAAT
AATTGAAAAACATAAACATGAGAAGAATTTCTCACTCTGAATATGAAAATACCACCACAAGGCACAAACCATAGCACGAAATACCAAATTTTATTCAGAC
CTCCCTAGGCCAAACCATAAACCGCCATATATAAAAGTTTTAAAAACCATAAACCGTGTACTAAAACATAAAAGCAGTTCCATAGTAGTAAACCATAAAC
AGAAAATTAAAATGCATTCATAATAGCGAAACGGATTTAAATGCCACCACGAAGACGGAGAACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAATCC
GCAAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCAGGGGGGATTCCTTCCTTATCTTGAATTTTTGCCTTTACATTGT
CGATTGTATCCGAGCTTTCAACCTCGAGGGTTATTGTCTTTCCTGTAAGGGTCTTTACAAAAATCTGCATACCACCACGAAGACGGAGAACCAAGTGGAG
AGTAGACTCCTTTTGAATGTTGTAATCAGCAAGAGTCCTCCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCCTCC
TTGTCTTGGATTTTTGCTTTGACATTGTCAATTGTGTCGGAGCTCTCAACCTCCAAGGTTATTGTCTTCCCAGTAAGGGTCTTAACAAAAATCTGCATAC
CACCACGAAGACGGAGAACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCAAGAGTCCTACCATCTTCTAGCTGCTTCCCGGCAAAGATGAG
CCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGTATTTTAGCTTTTACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTTATGGTCTTTCCA
CGAGGGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTC
TATGGTATCAGAACTCTCGACCTCGAGAGTGATGGTTTTACCGGTTAGGGTTTTCACGAAGATTTGCATCT