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Detailed information on CNT30642364


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-150

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200687Cannabis sativaPisum sativum94.9594.3883.41621forward

Expression of CNT30642364

Peptides detected in this lncRNA

>peptide 1 (94 aa)
ECCNQPKSYHLPTVYQQKSTSAGLVGYPLCPEFSPLHCLWYPNFPPPKLWSFRSRSSQRSACHPSDAAPNEGSTPFGCCNQLKSCHLPIAYRQR*

>peptide 2 (82 aa)
LNVVISQSPTIFQLFTSKNQPLLVWWDTLFVLNFRLYIVYGIRTFHLQSYGLSGQGLHKDLHATPQTQHQMKGRLLLDVVIS*

>peptide 3 (71 aa)
MKCGLLLNVVISQSPSILKLLTGKDKSLLVWWDTFLILDLSLDIVNGIRTLNLESDGLSCKGFHKDLHLKLH

>peptide 4 (31 aa)
MVSELSTSKVMVFPVKVFTKICMPPLRRSTK*

Sequence

>CNT30642364
CTGAATGTTGTAATCAGCCAAAGTCCTACCATCTTCCAACTGTTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATT
TTCGCCTTTACATTGTCTATGGTATCCGAACTTTCCACCTCCAAAGTTATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCATGCCACCCCTCAGAC
GCAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCTAAAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATAAGTCTCTGCTGGTC
TGGTGGGATTCCTTCCTTGTCTTGAATTTTCGCCTTTACATTGTCAATTGTATCCGAGCTTTCTACCTCAAGGGTAATGGTCTTTCCTGTAAGGGTCTTC
ACAAATATTTGCATACCGCCACGAAGACGAAGCACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCAAGTTGCT
TACCGGCAAAGATAAGTCTCTGCTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCAACCTCGAG
AGTGATGGTCTTTCCTGTAAGGGTTTTCACAAAGATTTGCATCTAAAATTACAC