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Detailed information on CNT30641615


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT007113, E-value = 7e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524663Nymphaea colorataSetaria italica79.7875.9590.5442forward
CNT30549212Nymphaea colorataIpomoea triloba81.9515.0595.37454forward
CNT30272552Nymphaea colorataChenopodium quinoa78.8834.7492.22437forward
CNT30730494Nymphaea colorataCorchorus capsularis81.4151.2596.23451forward
CNT30220801Nymphaea colorataHordeum vulgare64.892.5388.02359forward
CNT30396824Nymphaea colorataTriticum turgidum79.4243.6989.77440reverse complement
CNT30569398Nymphaea colorataActinidia chinensis81.4123.0896.9451forward
CNT30511593Nymphaea colorataSolanum lycopersicum35.5630.2689.85197forward
CNT30552690Nymphaea colorataOryza glaberrima81.4129.4689.8451forward
CNT30688674Nymphaea colorataTriticum urartu81.4134.2490.47451forward
CNT30347837Nymphaea colorataEragrostis tef80.6957.9889.71447reverse complement
CNT30363261Nymphaea colorataSorghum bicolor76.5333.3189.86424forward
CNT30620564Nymphaea colorataCajanus cajan81.598.7394.69452reverse complement
CNT30596724Nymphaea colorataOryza meridionalis73.6516.8789.71408reverse complement
CNT30410880Nymphaea colorataPapaver somniferum81.4149.7897.12451forward
CNT3036965Nymphaea colorataCucumis melo81.4161.9596.67451forward
CNT30104374Nymphaea colorataOryza rufipogon81.4133.9689.36451reverse complement
CNT30497700Nymphaea colorataDigitaria exilis22.9223.2292.13127reverse complement
CNT30115272Nymphaea colorataEutrema salsugineum43.6849.7988.02242forward

Expression of CNT30641615

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLSAVIRSALGYPAFTVGTITGTPEFGPYPVWALEH*

>peptide 2 (82 aa)
LILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWVAKCGADNC*

Sequence

>CNT30641615
CTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCA
GAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCG
TGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCTAC
TTCCCCAGAGCCTCTGGTAGCACAGTTGAGACAGCGACGGGTTCTCTGTCCCTGCTGGGATGGAGCGACAGAAGTATTGAGAATCCAAGATAAGGTCACG
GCGAGACGAGCCGTTTATCATCACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGAGAGATTTGAACCTTGTTC
CTACATGACCCGATCAATTCGATCAGGCACTCGCCATCTATTTTCATTGTTCCA