« Back to Nymphaea colorata search


Detailed information on CNT30641294


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 3e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696066Nymphaea colorataOryza sativa44.4255.988450forward
CNT30524978Nymphaea colorataPhaseolus vulgaris45.7159.4484.02463forward
CNT30186790Nymphaea colorataSecale cereale45.2148.7288.21458forward
CNT30589827Nymphaea colorataMusa acuminata41.2654.7886.84418forward
CNT30552192Nymphaea colorataOryza glaberrima45.2155.1888.65458forward
CNT30251349Nymphaea colorataAvena sativa51.6352.0987.38523forward
CNT30472898Nymphaea colorataSaccharum spontaneum51.8353.7487.24525forward
CNT30345516Nymphaea colorataEragrostis tef48.9666.6788.1496forward
CNT30621216Nymphaea colorataCajanus cajan34.1645.3586.71346forward
CNT30596901Nymphaea colorataOryza meridionalis51.3353.3386.92520forward
CNT30103289Nymphaea colorataOryza rufipogon51.2347.486.71519forward
CNT30556644Nymphaea colorataPanicum hallii46.5955.0888.14472forward

Expression of CNT30641294

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDQAGVAEVVEPSLAEDLSSGLEPHGLTELDAVPGEQLGEDAAECAQHSPPSVDHLQLPVLGEGLGVG*

>peptide 2 (49 aa)
MVTRPSPSISEAAEGVSLTAFPARVGEDRAMVAIACSLFSDFSSAKVCG*

>peptide 3 (31 aa)
MRYPSTAPMRMTWQAQMAKMLCAWIRLGLPR*

Sequence

>CNT30641294
TAGAGTCTGTAAATCTGTCACATGAATCCACATGTTGAAGAAGGTAGGTGCCTGTAAAAACACACACACACAAAGAGACCTTGAGAGAGGGAGAGACAGA
GAGAGACTTGGACAATGAATATCTCTTGATTAATTGGAAAAGGTTCTCACACTAACATGACACAAACTCTTAATCCTTCCATTTCATGTACAAACCACCA
GATCAAACGCCCCCACATAGATGATCATGACTCTTTTTAACTCATTCACTCAATCCTAGTCTGAACTCTTCATCCGTCCATCACAGTCGGAGAAAGGCCT
CACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCAAGTGGGTCGAAGCTGCCACCGGGGTACAGGGGAT
CTGTCACCTCACCGAGCGGTCCGCCGGCAATGCGGTACCCCTCAACGGCACCCATGAGAATGACCTGGCAGGCCCAGATGGCCAAGATGCTCTGTGCATG
GATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACGGCCTCACCGAACTTGACGCCGTTCCTG
GCGAGCAGCTCGGGGAAGACGCAGCCGAGTGCGCCCAACATAGCCCACCTAGCGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAAGGTCTCGGGGTCGG
CTGAGAGCCCAGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCACCGGTAAGGTAGGATGGGGGCTCGCCGGACAAGGGGCCGAGGTATTTGACACGGTC
TGGGCCGTACCAGGGGCTGCCGGAGGAGGCCACCCTGGTGGGCTTGGAGACGCTCTTCCTCATGGTGACGCGCCCATCACCGAGCATCTCTGAGGCGGCA
GAGGGGGTCAGCTTGACCGCCTTTCCGGCCAGAGTTGGGGAAGACAGAGCCATGGTTGCCATTGCTTGCTCTCTCTTCTCAGATTTCTCTTCTGCAAAGG
TGTGTGGGTGAGT