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Detailed information on CNT30641079


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 6e-121

BLAST vs NONCODE:
NONBNAT004015, E-value = 4e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Nymphaea colorataSetaria viridis48.7243.5688.67362forward
CNT30522155Nymphaea colorataSetaria italica43.236.5290.97321forward
CNT30534291Nymphaea colorataEucalyptus grandis24.929.0481.62185forward
CNT30516889Nymphaea colorataJuglans regia21.6726.6184.47161forward
CNT30377262Nymphaea colorataArabidopsis thaliana39.4350.1784.64293forward
CNT30617295Nymphaea colorataSesamum indicum18.4433.4182.48137forward
CNT3092760Nymphaea colorataSolanum tuberosum33.2435.6981.78247forward
CNT30291318Nymphaea colorataTriticum aestivum34.1976.2886.61254forward
CNT30390564Nymphaea colorataTriticum turgidum13.4632.8993100forward
CNT30562825Nymphaea colorataActinidia chinensis33.3844.9385.08248forward
CNT30553024Nymphaea colorataOryza glaberrima43.6122.6990.74324forward
CNT30442409Nymphaea colorataAegilops tauschii31.7635.2287.29236forward
CNT3078381Nymphaea colorataBrassica juncea29.4882.0283.11219forward
CNT30261872Nymphaea colorataBrassica rapa42.2635.4884.71314forward
CNT3041960Nymphaea colorataChlamydomonas reinhardtii16.2935.4886.78121forward
CNT30203517Nymphaea colorataHelianthus annuus41.0527.1481.64305forward
CNT30681848Nymphaea colorataTriticum urartu48.7240.986.19362forward
CNT30722476Nymphaea colorataTriticum spelta31.7635.2886.02236forward
CNT30621035Nymphaea colorataCajanus cajan28.1330.5683.25209forward
CNT30595966Nymphaea colorataOryza meridionalis49.5360.0392.12368forward
CNT3057373Nymphaea colorataAmborella trichopoda32.1743.8580.33239forward
CNT3024644Nymphaea colorataPopulus trichocarpa40.5114.7285.71301forward
CNT30328090Nymphaea colorataAsparagus officinalis32.0370.4186.13238forward
CNT3036150Nymphaea colorataCucumis melo13.1929.0886.7398forward
CNT30150001Nymphaea colorataBrachypodium distachyon10.2324.0590.7976forward
CNT3099978Nymphaea colorataOryza rufipogon46.4342.5988.41345forward
CNT30333708Nymphaea colorataCynara cardunculus41.4538.0282.79308forward
CNT3049477Nymphaea colorataCucumis sativus7.9420.7788.1459forward

Expression of CNT30641079

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MFLASHICWVSSGTVRARYCWDPREVRGAKPTMKKCSRGKGMRFTASFRRASLSRTMHSSAFSTSWCTDSVAL*

>peptide 2 (81 aa)
VLDLFFFLFVLAIVVDGGVLVLLVLRDEVVHVALRLRELHLVHPFPCVPVELPTKVEAMDRPRGGMSQTLDLTLLGIHSTK*

>peptide 3 (37 aa)
RPGFVLLPLRTRHRRRRWRPGTAGTPRRGRSCCSPPP*

>peptide 4 (72 aa)
SSWICSSSSSYSPSSSTVASWYCWYSETRSFMLLSASVNSISSIPSPVYQWSCRRRWRPWTDHGAGCRRRLT*

Sequence

>CNT30641079
TCGTCCTGGATTTGTTCTTCTTCCTCTTCGTACTCGCCATCGTCGTCGACGGTGGCGTCCTGGTACTGCTGGTACTCCGAGACGAGGTCGTTCATGTTGC
TCTCCGCCTCCGTGAACTCCATCTCGTCCATCCCTTCCCCTGTGTACCAGTGGAGTTGCCGACGAAGGTGGAGGCCATGGACAGACCACGGGGCGGGATG
TCGCAGACGCTTGACTTGACGTTGTTGGGGATCCACTCCACGAAGTAGGAGGAGTTCTTGTTCTGCACGTTGATCATCTGCTCGTCCACCTCCTTGGTGC
TCATCTTCCCCCTGAACATGGCGGACGCCGTCAGGTAGCGGCCGTGCCTCGGGTCAGCCGCGCACATCATGTTCTTGGCATCCCACATCTGCTGGGTGAG
CTCCGGGACGGTGAGGGCCCGGTACTGCTGGGACCCGCGGGAGGTGAGAGGGGCGAAGCCCACCATGAAAAAGTGCAGCCGGGGGAAGGGGATGAGGTTC
ACCGCCAGCTTCCGCAGGGCCTCGTTGTCCAGGACCATGCACTCGTCCGCGTTCTCCACCAGCTGGTGCACCGACAGCGTCGCGTTGTAAGGCTCGACCA
CCGTGTCCGACACCTTGGGCGACGGGAACACCGAGAACGTCAGCATCATCCGATCCGGGTACTCCTCCCGGATCTTGGATATCAGCAGCGTCCCCATTCC
CGATCCGGTCCCTCCTCCCAGCGAATGGCAGACCTGGAACCCT