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Detailed information on CNT30640997


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M040|PDC4_ARATH, E-value = 3e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522505Nymphaea colorataSetaria italica34.9134.5584.21133forward
CNT30391302Nymphaea colorataTriticum turgidum23.3617.9485.3989forward
CNT30562761Nymphaea colorataActinidia chinensis34.9112.0183.46133forward
CNT30135707Nymphaea colorataLolium perenne34.9114.5585.71133forward
CNT30202534Nymphaea colorataHelianthus annuus38.0630.3380.69145forward
CNT30362074Nymphaea colorataSorghum bicolor28.8719.5486.36110forward
CNT30101892Nymphaea colorataOryza rufipogon34.9121.7385.71133forward
CNT30576296Nymphaea colorataOryza barthii34.9128.2486.47133forward

Expression of CNT30640997

Peptides detected in this lncRNA

>peptide 1 (99 aa)
MQITGRFSLYAPAMAFSTLRPPTVIEKSEVKISWNREDIGDAHLNKAPGEMATERPVRRDVADGSRRDVHGLGGRRSTHVVAGRPGTLHSDLGVHISFLL

>peptide 2 (54 aa)
LGEIRQPDRVMKDPVGAVVVRVRPTDDADHRQVFTVRPSNGVQHAEAADGDREE*

Sequence

>CNT30640997
CCTGGGAGAAATCCGGCAACCCGATCGTGTGATGAAGGATCCTGTTGGTGCCGTAGTCGTTAGAGTTCGGCCCACCGACGATGCAGATCACCGGCAGGTT
TTCACTGTACGCCCCAGCAATGGCGTTCAGCACGCTGAGGCCGCCGACGGTGATCGAGAAGAGTGAGGTTAAAATCTCCTGGAACAGAGAAGACATCGGA
GACGCCCACCTGAACAAGGCGCCGGGCGAGATGGCGACCGAGCGTCCAGTCCGCCGAGACGTCGCAGACGGCAGTCGGCGTGACGTGCACGGCCTTGGAG
GAAGGCGGAGCACCCACGTCGTTGCTGGCCGGCCTGGCACACTCCACTCCGATCTTGGTGTCCATATTTCTTTCCTTCTTC