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Detailed information on CNT30640885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001145, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381313Nymphaea colorataManihot esculenta28.1540.585.96228forward
CNT30462400Nymphaea colorataSaccharum spontaneum21.7312.9384.66176forward

Expression of CNT30640885

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPWVGTLVHGVQPNRRRPLPKPSWPLQRSCQCHGHHPTESLAQQW

>peptide 2 (29 aa)
MRVRFPLLVASIFSLRERERERECSKAKK*

>peptide 3 (36 aa)
MAFSQIEEDLCPNLLGHFKGPVNAMVTIQQNLWLNNG

Sequence

>CNT30640885
GGTGCACGTTTCTGTTAACACAATCTGGCAACTGTCCATGTATTCCCAGGTTGCCAATCCAAATAGAAAAAATTTAATGGGATAACTGTATTTTATATTT
TCATTCTTCACCAACACTGTAAACAATATATCTGCTTCAAAGCGTGTTTAGACCTGCAACGCAAGTGTGAGAAAAGGAATTTCTTATCTGGTGTTTTAGA
GGCAGATATAGAGACGCCAGATGAGAGTAAGGTTTCCTCTACTTGTAGCATCCATTTTTTCTTTGAGAGAGAGAGAGAGAGAGAGAGAGTGCAGTAAAGC
AAAAAAATGAAGGGACTAAGCAAATAATAGTAAAAAACAGACTACATGAGTATTTAGTCCCCACTAGGCTGGAAACGCAAAGAAAAGGGCAATTGTATAC
ACGCTGCATGCACCAAAGCAAGCAGCAGAAGCTACTCCACGGAACAGTAGACTTAAGAACATAGAATTTTGCTTCAGTAAACATAGCCCTTGACAAACAT
GCCCTGCTTAGATTCCTCTGACTCTCCCTCACCAGTGTATTTTCCGAGCTGAGCAAGGGAGTTGGCCTTGGCCCTCAGGAGAAGTGCATCCTGTGCTGCC
TTAACATTCTCTGGTCTGCCACCCCATGTTTTGAGGCAAGTGTTCTGGAGGGCTCTTGCATATGAGAACGACACATGCCATGGGTTGGGACCCTGGTTCA
TGGCGTTCAGCCAAATAGAAGAAGACCTCTGCCCAAACCTTCTTGGCCACTTCAAAGGTCCTGTCAATGCCATGGTCACCATCCAACAGAATCTCTGGCT
CAACAATGGG