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Detailed information on CNT30640852


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJU4|ALFP1_ARATH, E-value = 1e-35

BLAST vs NONCODE:
NONBRAT002258, E-value = 4e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Nymphaea colorataOryza sativa31.728.4284.55110forward
CNT30677073Nymphaea colorataSetaria viridis35.458.1682.11123forward
CNT30523788Nymphaea colorataSetaria italica35.4511.786.18123forward
CNT30381337Nymphaea colorataManihot esculenta41.7911.9682.07145forward
CNT30586190Nymphaea colorataMusa acuminata27.6737.2182.2996forward
CNT30261311Nymphaea colorataBrassica rapa53.8949.0884.49187forward
CNT3017878Nymphaea colorataZea mays35.4517.890.24123forward
CNT30479631Nymphaea colorataArabidopsis halleri34.8717.0785.95121forward
CNT30367502Nymphaea colorataSorghum bicolor42.3623.2283.67147forward
CNT3029174Nymphaea colorataTheobroma cacao38.3313.2684.96133forward
CNT30104230Nymphaea colorataOryza rufipogon31.74.4784.55110forward
CNT30557185Nymphaea colorataPanicum hallii35.4519.3489.43123forward
CNT30551796Nymphaea colorataOryza brachyantha31.714.0584.55110forward
CNT3040010Nymphaea colorataMarchantia polymorpha36.627.9184.25127forward

Expression of CNT30640852

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MEERSRDCPFKNSDLSSTGDDLRRDALAISSGYSALCLRPSS*

>peptide 2 (76 aa)
LVDFDAGDDVLGDENVDHLLALGGGLVKRLLEEDGSRDVLAEARGGDEQSAVGLAVGLRVLQPDGGAQQGLPLQEL*

Sequence

>CNT30640852
CCTTGTCGACTTTGATGCCGGGGACGATGTTCTGGGAGACGAGAACGTCGACCATCTTCTGGCCCTCGGTGGTGGACTGGTAAAGCGTCTCCTCGAAGAG
GATGGCTCCAGAGATGTACTGGCCGAGGCCAGGGGCGGAGACGAGCAGAGTGCGGTAGGCCTGGCGGTTGGCCTCCGTGTTCTCCAGCCCGATGGAGGAG
CGCAGCAGGGACTGCCCCTTCAAGAACTCTGACTTGTCCAGCACGGGGGACGACTTGAGGAGAGATGCGCTCGCCATTTCCTCCGGTTACTCCGCTCTCT
GTCTCCGGCCTTCTTCTTAGCTCAAACAGCTACAATGGCTGCCTCAC