« Back to Nymphaea colorata search


Detailed information on CNT30640799


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002454, E-value = 3e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30490123Nymphaea colorataOlea europaea68.8630.189.5524forward
CNT30712870Nymphaea colorataGlycine max56.6425.9387.94431forward
CNT30157603Nymphaea colorataPistacia vera73.7258.8185.03561forward
CNT30181978Nymphaea colorataSecale cereale97.3783.8287.99741reverse complement
CNT30435868Nymphaea colorataAegilops tauschii97.3753.1687.99741forward
CNT30242955Nymphaea colorataAvena sativa49.0139.9885.25373forward
CNT3082633Nymphaea colorataBrassica juncea41.5296.0589.24316forward
CNT30605266Nymphaea colorataGossypium raimondii77.6628.2486.46591forward
CNT3057903Nymphaea colorataAmborella trichopoda101.9732.3985.95776reverse complement
CNT3038420Nymphaea colorataCucumis melo87.5246.6488.89666forward
CNT30577866Nymphaea colorataOryza barthii32.0614.9885.25244reverse complement

Expression of CNT30640799

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSRLKRALTGLGGPNPCNGDDLRLGAKGQPGSDIAGFLQNLF*

>peptide 2 (31 aa)
MIVVHIWPETDRSSHEQVEESSNRPWRTEPM*

>peptide 3 (29 aa)
MTTRRWAWKHPSFEESVIAHWSSSMARKM*

>peptide 4 (55 aa)
MMSMARGRALNGLGCPPCHFTNPRETPNTGLDRLYRHTFWVLRSKVERKTTQIVH*

>peptide 5 (49 aa)
MSLYQPQGNSEYRPRSFVQTYFLGAKIKSREENNPDRTLRSLSNHIVEK*

Sequence

>CNT30640799
TGTGAGGTAAAGGTGAAGAGAACCCTATGACGAAAGTGCAATAGAGAACCTGAGATCTGATGCGAAGAATCAGTCGAAGGAGCGGAGCTGAGAGCTAGCG
GATGCACTAACTCTAACAGCGTACCTTTTGCATGATGGGTTAGCGAGGAAATGGGAACAACTACTTAAGCCATTTAGTGTAGGCACTTTCCAGAGGTCGC
ATATGATAGTTGTCCATATTTGGCCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCATGTAATG
GGGATGACTTGCGGCTAGGGGCGAAAGGCCAACCAGGATCGGATATAGCTGGTTTTCTGCAAAATCTGTTTTAGTAGAGTGTATGATGTCGATGGCTAGA
GGTAGAGCACTCAATGGGCTAGGGTGCCCCCCATGTCACTTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACATACTTTTT
GGGTGCTAAGATCAAAAGTCGAGAGGAAAACAACCCAGATCGTACACTAAGGTCCTTAAGCAATCACATAGTGGAAAAGTAAGTGATCAAGCGATGACAA
CCAGGAGGTGGGCTTGGAAGCATCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACGGAAAATGTAGTAGGGATCAAGTGATTC
ACCGAAACGAGGAGACCTTGAAAGGTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTTAATC