« Back to Nymphaea colorata search


Detailed information on CNT30640394


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A804KTT0|PIP12_MUSAM, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Nymphaea colorataOryza sativa34.622.7983.82173forward
CNT30523825Nymphaea colorataSetaria italica24.839.2485.48124forward
CNT30163276Nymphaea colorataPistacia vera15.224.6886.8476forward
CNT30297784Nymphaea colorataTriticum aestivum28.416.2183.1142forward
CNT30221117Nymphaea colorataHordeum vulgare24.25589.26121forward
CNT30385796Nymphaea colorataTriticum turgidum25.831.3986.82129forward
CNT30541063Nymphaea colorataBrassica napus37.623.6881.38188forward
CNT30658043Nymphaea colorataTriticum dicoccoides25.847.0886.82129forward
CNT30461535Nymphaea colorataSaccharum spontaneum25.225.184.92126forward
CNT30133582Nymphaea colorataLolium perenne23.65988.98118forward
CNT30232947Nymphaea colorataAnanas comosus40.485.2382.67202forward
CNT3038708Nymphaea colorataCucumis melo33.612.7982.74168forward
CNT30148622Nymphaea colorataBrachypodium distachyon12.22586.8961forward
CNT30495761Nymphaea colorataDigitaria exilis24.631.3887.8123forward
CNT30603734Nymphaea colorataOryza punctata39.815.1682.41199forward
CNT30113851Nymphaea colorataFicus carica14.425.9986.1172forward
CNT3050414Nymphaea colorataCucumis sativus39.420.4181.73197forward

Expression of CNT30640394

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPWMPTVVHRPVLDLFTPITVRMVAMNSAIPALQKDHDWSSPGSNSGAGGGSL*

>peptide 2 (96 aa)
RRQRRRWPPSTASPCRRLPLSATASSPAAVQTSQQGLYAHLDAGSAVDEGKDHTTEGPSDALDADGGTQTSVGPFHPHNGEDGGHELRYPRPPEGP*

>peptide 3 (40 aa)
MTGARRARTAAPAAVPCSPCPGSAPPFRSAASQRICWHRV*

>peptide 4 (41 aa)
DDASAADGPQALHHHVEDCPCQRQLPRQQQSKRHSRVYMPT*

Sequence

>CNT30640394
GACGACGCCAGCGCCGCAGATGGCCCCCAAGCACTGCATCACCATGTAGAAGATTGCCCTTGTCAGCGACAGCTTCCTCGCCAGCAGCAGTCCAAACGTC
ACAGCAGGGTTTATATGCCCACCTAGATGCCGGCAGTGCAGTAGACGAGGGCAAAGATCATACCACCGAAGGCCCAAGCGATGCCCTGGATGCCGACGGT
GGTACACAGACCAGTGTTGGACCTTTTCACCCCCATAACGGTGAGGATGGTGGCCATGAACTCCGCTATCCCCGCCCTCCAGAAGGACCATGACTGGAGC
TCGCCGGGCTCGAACAGCGGCGCCGGCGGCGGTTCCTTGTAGTCCTTGTCCTGGCTCTGCGCCGCCGTTCCGATCGGCTGCCTCTCAGAGAATTTGTTGG
CACCGAGTCTAACATCTTCTTCCTTCCCCTCCATGATCCTGTTCCTCACAAGCCTCTCTTCCTTTCTTTCTCTCCTCTCTGGTTCTTCTCACTGTCCTGC