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Detailed information on CNT30640190


BLAST search results

BLAST vs Swiss-Prot:
sp|B8AME2|CATA3_ORYSI, E-value = 2e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Nymphaea colorataJuglans regia18.4733.9781.76159forward
CNT30377107Nymphaea colorataArabidopsis thaliana13.1223.8981.42113forward
CNT30501026Nymphaea colorataCoffea canephora27.1815.3279.49234forward
CNT30282683Nymphaea colorataChenopodium quinoa33.9131.779.45292forward
CNT3021611Nymphaea colorataCitrullus lanatus20.0943.5879.77173forward
CNT3070085Nymphaea colorataQuercus suber25.6733.978.73221forward
CNT30380803Nymphaea colorataManihot esculenta13.4724.7385.34116forward
CNT30405510Nymphaea colorataBeta vulgaris15.4528.380.45133forward
CNT3046375Nymphaea colorataPrunus dulcis32.0639.5481.52276forward
CNT30260467Nymphaea colorataBrassica rapa10.6922.0686.9692forward
CNT30475173Nymphaea colorataSaccharum spontaneum23.4627.1979.21202forward
CNT30654455Nymphaea colorataRosa chinensis1833.9280155forward
CNT30715065Nymphaea colorataMalus domestica golden31.3618.9980.37270forward
CNT30478285Nymphaea colorataArabidopsis halleri9.5223.784.1582forward
CNT30368538Nymphaea colorataSorghum bicolor18.5826.6782.5160forward
CNT30154268Nymphaea colorataPrunus persica17.8932.3584.42154forward
CNT30574555Nymphaea colorataVitis vinifera28.5729.7578.86246forward
CNT30704833Nymphaea colorataPrunus avium31.8238.3881.39274forward
CNT3022569Nymphaea colorataPopulus trichocarpa33.3333.179.09287forward
CNT3038372Nymphaea colorataCucumis melo21.1416.5581.87182forward
CNT30576697Nymphaea colorataOryza barthii18.1235.9482.05156forward
CNT3050211Nymphaea colorataCucumis sativus21.1448.481.87182forward

Expression of CNT30640190

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQTYMTCSSSKWNLQANTIIHRQLKPQIGLT*

>peptide 2 (73 aa)
MTVIGTTNHHSLLIQQALHSTCRSPVEFHILFPSCLVNQSVSIDTRSIHMTIICWDTNIIKQKSEHMQALRVVR

Sequence

>CNT30640190
CCAAGCATCAGTTAAATGTGGATGAATAGACATGTTTAAGTAGAAATCGAAGTTAGAACTCCATCCAAGACTCCCTTAATTTTTGAATGCCATTAAGAAA
CTCGGACGCTGTTATAACTTTTAAAAATTGGAATTAACACTTCATGCAGACATATATGACTTGCAGCAGCAGCAAATGGAACCTTCAAGCCAACACAATA
ATCCATAGACAACTGAAGCCACAAATAGGTTTAACTTGACCCATTCAAAAAACAGATATTGGTAAATGGACATACCTCTTCATCCCTGTGCATGAAATTC
ATAAATCCATCATAATGATTGTTGTGGTGTGAGCATTTTGGTGCATTTGCTGGAAGCATCAGATAATTGGGTCCAAGACGATGCCTCTGAGTATCTGAAT
ATGAGAAAATTCTAGTTTGGAGCAATTTGTCTTCCGAATAATGCACTCCTGGCACCACAATCCCAGGGCAAAAGGCAAGTTGCTCATTCTCAGTAAAGAA
ATTATCAATGTTCCTGTTCAACACTAAACGCCCAACTGGCTGAAGAGGTAAGATGTCCTCAGGTGGGATAGTCTGGATGAAAAGCTTCCATTCTGGGTAA
TTTCCAGCTGCAATGGCATCATAAAGATCCTTAGTAGCATGACTGTGATTGGTACCACCAACCACCACAGCCTCCTCATCCAACAGGCACTTCACTCCAC
ATGTAGGTCTCCAGTGGAATTTCACATATTGTTCCCTTCCTGCCTTGTTAATCAAAGTGTAAGTATTGACACCAGATCCATCCATATGACGATAATCTGC
TGGGATACCAACATCATCAAACAGAAAAGTGAACATATGCAAGCTCTCAGGGTGGTGCGAA