Detailed information on CNT30640181


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41249|PORA_CUCSA, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678552Nymphaea colorataSetaria viridis14.6420.9485.9271forward
CNT30522232Nymphaea colorataSetaria italica24.1211.7484.62117forward
CNT30131011Nymphaea colorataLolium perenne22.8918.1784.68111forward
CNT30679064Nymphaea colorataTriticum urartu29.2815.1783.1142forward
CNT3052469Nymphaea colorataAmborella trichopoda44.1237.0980.84214forward
CNT30497116Nymphaea colorataDigitaria exilis24.1211.8883.76117forward
CNT30113199Nymphaea colorataFicus carica18.9721.183.792forward

Expression of CNT30640181

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MVTCHLPLSTKALAVASPRPEEAPVMMTFPFLSVFFASAEALLIDGVVTAVCALTLPTNAVCFT

>peptide 2 (61 aa)
MAEVVCSDAQFEAVSGVGRLLGRRQVDGGIADEHVEGLPRPPEIVHKLPHAIEGGSPCRPW*

>peptide 3 (60 aa)
MPFAALYQGLSGGKSQTRRSTGDDDVSFPQCLLCIGRGPVDRWGGHCCLRPHAAHQRRLLH

>peptide 4 (35 aa)
MGSLICSCPREASGKEGNGRGGLFRRSVRSRQRCR*

Sequence

>CNT30640181
GGAAAGGGAAAAGGGTCTTGTAACTCACCGGTGATGGAACCGACAATGATAAGGCGCTTCGATGGGTAGTCTGATTTGTTCATGTCCTCGAGAAGCAAGC
GGGAAAGAAGGAAATGGCCGAGGTGGTTTGTTCCGACGCTCAGTTCGAAGCCGTCAGCGGTGTAGGTAGGCTCCTTGGCCGTCGGCAGGTAGACGGCGGC
ATTGCAGACGAGCACGTCGAGGGGCTTCCCCGACCGCCGGAAATTGTCCACAAACTGCCTCACGCTATCGAGGGAGGAAGTCCCTGCAGGCCATGGTGAC
ATGCCATTTGCCGCTCTCTACCAAGGCCTTAGCGGTGGCAAGTCCCAGACCCGAAGAAGCACCGGTGATGATGACGTTTCCTTTCCTCAGTGTCTTCTTT
GCATCGGCAGAGGCCCTGTTGATCGATGGGGTGGTCACTGCTGTCTGCGCCCTCACGCTGCCCACCAACGCCGTCTGCTTCACCG