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Detailed information on CNT30640134


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 2e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513072Nymphaea colorataJuglans regia40.4167.1585.25278forward
CNT30373037Nymphaea colorataArabidopsis thaliana47.5316.0582.57327forward
CNT30728649Nymphaea colorataCorchorus capsularis44.6228.1986.64307forward
CNT3071371Nymphaea colorataQuercus suber33.4380.1482.61230forward
CNT30405829Nymphaea colorataBeta vulgaris47.0939.2382.1324forward
CNT30636551Nymphaea colorataCapsicum annuum42.5944.3981.91293forward
CNT30192963Nymphaea colorataSecale cereale33.1442.783.33228forward
CNT30224139Nymphaea colorataHordeum vulgare28.263.8284.54194forward
CNT30543621Nymphaea colorataBrassica napus21.2257.0384.93146forward
CNT30510528Nymphaea colorataSolanum lycopersicum48.1125.786.4331forward
CNT30143750Nymphaea colorataMedicago truncatula28.225.3387.11194forward
CNT30441049Nymphaea colorataAegilops tauschii23.8443.3985.37164forward
CNT30665536Nymphaea colorataTriticum dicoccoides26.4527.6287.36182forward
CNT30312884Nymphaea colorataCamelina sativa43.929.8781.46302forward
CNT30263621Nymphaea colorataBrassica rapa43.4625.2781.94299forward
CNT30612508Nymphaea colorataArabis alpina51.3113.9182.44353forward
CNT30445994Nymphaea colorataSaccharum spontaneum47.3822.8985.28326forward
CNT301916Nymphaea colorataZea mays36.4861.6780.08251forward
CNT30212259Nymphaea colorataHelianthus annuus33.5834.6381.82231forward
CNT30716232Nymphaea colorataMalus domestica golden46.0823.9182.97317forward
CNT30361875Nymphaea colorataSorghum bicolor43.927.3885.1302forward
CNT30706279Nymphaea colorataPrunus avium45.6451.7382.48314forward
CNT3054398Nymphaea colorataAmborella trichopoda22.0922.1684.21152forward
CNT3024028Nymphaea colorataPopulus trichocarpa40.8438.0285.41281forward

Expression of CNT30640134

Peptides detected in this lncRNA

>peptide 1 (47 aa)
QISRCNSPAPAMICSPDSSIVQTTMGSDLARRFRPSTSLGRSEATLH*

>peptide 2 (62 aa)
MCIDFLLICQSCILGNELIQTNHGNCVTTWNILNRFLLFPHPNNCSLHTLHIQVFIICLIGS*

>peptide 3 (33 aa)
MATVLPHGTSSTDSCFFPIQITVLCTLFTYRYL*

>peptide 4 (46 aa)
MWENQYSCWSISWWLGRSSFHPTVFPSSWTHRLQTLMHTFWQSLSV*

Sequence

>CNT30640134
CAGATTTCAAGGTGCAATTCTCCAGCACCAGCAATGATATGCTCGCCAGATTCTTCGATTGTACAGACAACCATGGGATCTGACTTGGCCAGACGCTTCA
GACCTTCAACAAGTTTGGGAAGATCAGAAGCAACTTTGCATTGAACAGCCACACGGACAACAGGTGAAACAGAAAACTTCATTGCCCTGATCGGATGTGC
ATCGACTTCCTTCTCATTTGTCAGAGTTGCATTCTTGGTAATGAACTGATCCAGACCAACCATGGCAACTGTGTTACCACATGGAACATCCTCAACAGAT
TCTTGCTTTTTCCCCATCCAAATAACTGTTCTCTGCACACTCTTCACATACAGGTATTTATAATTTGCTTGATAGGCTCATAACAGAACTGAACAAATCC
TCTCTTGCATGTGGGAGAACCAGTACTCTTGTTGGTCCATTTCTTGGTGGCTGGGTCGAAGTAGTTTTCACCCCACAGTCTTTCCATCATCTTGGACTCA
TCGACTCCAAACTTTGATGCATACATTTTGGCAAAGTTTGTCAGTGTAAAAGCCCAACCGTGCAGTCCTGCAGAGAATGCCACGGTTCCCTTCTCAGGGT
AAACCTGTACGTCACCAAGCAATGCATCCTCATATGTAGCCATAATCACATTTGCATTTTCAATCACTCTTTGAAAGGTCTGATACGC