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Detailed information on CNT306401


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 1e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30464658Zea maysSaccharum spontaneum28.9621.9292.54201forward

Expression of CNT306401

Peptides detected in this lncRNA

>peptide 1 (51 aa)
LSAPRRIYIYSLYPYYMYMIAGACIHMFLTPSIYRRCSSFVAGIEVANARP*

>peptide 2 (43 aa)
MIATMDTSHPAENCWKAKEPWPGKRRKKKEKRKEETKQAKGTR*

>peptide 3 (68 aa)
MQGHDCNNGYITSSRELLESKGTMAGEKKKKKGKKERRNQASKGYTVTRSKTERQRRRMALATSSRRS*

Sequence

>CNT306401
ATTGTCGGCGCCTCGGCGGATTTATATATATAGTTTGTATCCATATTACATGTATATGATAGCCGGAGCTTGCATTCACATGTTCCTCACCCCAAGTATA
TATAGGCGTTGCAGTAGTTTTGTAGCAGGTATAGAGGTAGCCAATGCAAGGCCATGATTGCAACAATGGATACATCACATCCAGCAGAGAACTGCTGGAA
AGCAAAGGAACCATGGCCGGGGAAAAGAAGAAAAAAAAAGGAAAAAAGGAAAGAAGAAACCAAGCAAGCAAAGGGTACACGGTGACCCGAAGCAAAACCG
AACGACAGAGACGACGCATGGCACTAGCTACTAGCTCACGCAGGAGCTAGCTAGCTAGCTAGCCGGCGGGGGGCGGCCGGCGGGCGCGGTCTAGTCGCTG
CCCGGGGGCTTGTAGGCGATGAAGCTGACGCACTGCGTCTGCTTGATGTTGTCGAAGCCGATGACGCGGTGGAAGGCGTCCGGGTAGGATTTGATGGCCT
CCTGCAGCTCCTTGTACACCTGGGTGGCGTCGTTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTAGCACGGGGAGGTGGA
GTTCTCGCGGTACACGAAGCCGACCTTGCTGAACTCGAGGCTTCTGGAGGAGCGGCGGGCGACGGGGAGGCTGGCGGTGGACTTGAGCCCCTGG