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Detailed information on CNT30639906


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Nymphaea colorataOryza sativa12.920.8883.24185forward
CNT3042646Nymphaea colorataPrunus dulcis11.0227.2484.81158forward
CNT30589303Nymphaea colorataMusa acuminata11.5122.4889.09165forward
CNT3067156Nymphaea colorataLeersia perrieri12.0664.3186.13173forward
CNT30683958Nymphaea colorataTriticum urartu21.4827.6783.12308forward
CNT30361799Nymphaea colorataSorghum bicolor18.8328.3381.85270forward
CNT30596039Nymphaea colorataOryza meridionalis9.954.286.62142forward
CNT30579178Nymphaea colorataEchinochloa crusgalli21.2724.983.61305forward
CNT30116140Nymphaea colorataOryza nivara21.4839.9584.09308forward
CNT30603857Nymphaea colorataOryza punctata12.921.2682.16185forward

Expression of CNT30639906

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MSSPSLDRSKVPNGGKRRRRKIRREEEGIETERSDFVFVLNISSPFFFFAFLFLCRLGYLIRFWAMAD

>peptide 2 (34 aa)
GPLRRNFFFQHLSQSIKTFVIVFVTYFNERKIER*

>peptide 3 (43 aa)
MKFAPSWFDFIREKKKQGESIDPELGSKEANFSISFFFFLKRR*

>peptide 4 (37 aa)
MYPYTSSERKHPLRSTTANPFHVSRHLKFISVQYGHL*

>peptide 5 (64 aa)
MRRKGEKGRSEEVGTWGRRGSRSWRRWSGRRRRSVRCGGRRGRRAGRRRRGRGRSTGRSRSCPG*

>peptide 6 (58 aa)
MTDVSLYLIRKKTSPSLYDCEPVPCIASFKIHLCTIRSFMKPRGSLPAVVVVVISVPF*

Sequence

>CNT30639906
TCGGCCCACTGAGAAGAAATTTCTTCTTCCAACACTTGTCTCAATCGATAAAAACATTTGTTATAGTTTTCGTAACTTATTTTAATGAAAGAAAAATTGA
AAGGTAGGACGGGTCATCTAAGATGATGAGCGAGCGGTTGCGATAAAAACAGCAAAATCACTTCATCTCTTTCTTCATCATTCACCCACCCACTAAAAAA
ACACTTACGGATACATATTGTATGCAGTTTTCCTTCTTTTAAAACATATGGTCACACTCGAACAACATTCTTAAATAACAACACGCTTTTTTTGAAGCAA
GGAAATGAAATTTGCACCAAGTTGGTTCGATTTCATTAGGGAAAAGAAAAAGCAAGGCGAAAGTATCGATCCAGAACTCGGCAGCAAGGAAGCAAATTTC
TCTATCTCTTTTTTTTTTTTTCTGAAGAGAAGATAAACATGCTTTCTGAAAAAACCCCAGGTTTTGGGCTTTTAAGTTGCCAACAATAAACATTACTATT
TTTTAAACAACGGGCTAATCACACTACCCGAGACTAATAAGATTTTAGACTTTTTAAAAAAATTTAAAACAAAAAAAAGGGGCCCGACGTCCTCGTAAAT
GACGGATGTATCCCTATACCTCATCCGAAAGAAAACATCCCCTTCGCTCTACGACTGCGAACCCGTTCCATGTATCGCGTCATTTAAAATTCATCTCTGT
ACAATACGGTCATTTATGAAACCGCGAGGTTCCCTCCCCGCGGTCGTCGTCGTCGTCATCTCCGTCCCCTTCTGACCGATCTTCCCTTCCGATTGAGTGG
CAAGATCGTAATAAGGGGAACGGAGGGGAGAAAAGCTCGCCGCGGAAGAAACGGACGAAGAAGATGGGGAGATGAGGAGAAAAGGGGAGAAAGGAAGGAG
TGAAGAGGTAGGTACCTGGGGGAGGCGAGGCAGCCGATCATGGCGGAGATGGAGTGGCCGACGAAGGCGCAGCGTTCGATGCGGAGGGCGGCGAGGACGT
CGAGCAGGTCGTCGACGTAGGGGTCGAGGGAGGAGTACCGGGCGAAGTCGAAGTTGTCCGGGTTGACGCTGCCGGCGCAGACCAGGTCGTAGAGGACCAC
CCGGAAGTCCCTCACCAGGTACGGCAGCACCTTCTGCCACGCCGACTGGTCCGTCCCGAACCCGTGAGACAGCACCAGGAACCGGTCCCCCGTCCCCACC
ACCCTCACGTTCAGAACCTCCAGCAGCGATGTCCTCCCCATCTCTCGATCGATCCAAGGTTCCAAATGGGGGAAAACGAAGAAGACGGAAGATAAGAAGA
GAGGAAGAGGGGATTGAGACTGAGAGGAGTGATTTTGTTTTTGTTCTGAATATTTCTTCCCCCTTCTTCTTCTTCGCATTCCTCTTCCTCTGTCGTTTGG
GGTATTTAATACGATTTTGGGCGATGGCGGATAT