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Detailed information on CNT30639598


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Nymphaea colorataSetaria italica23.2811.9380.58139forward
CNT30514302Nymphaea colorataJuglans regia24.7925.9285.81148forward
CNT30268023Nymphaea colorataChenopodium quinoa24.2929.4182.07145forward
CNT3084841Nymphaea colorataVigna radiata24.7927.7282.43148forward
CNT30135597Nymphaea colorataLolium perenne17.7620.582.08106forward
CNT307034Nymphaea colorataZea mays23.2817.6281.29139forward
CNT30624138Nymphaea colorataDaucus carota22.4525.1483.58134forward
CNT30346089Nymphaea colorataEragrostis tef24.6226.1680.27147forward
CNT30597257Nymphaea colorataOryza meridionalis23.2827.8682.73139forward
CNT30355824Nymphaea colorataLactuca sativa20.615.7783.74123forward
CNT30371492Nymphaea colorataOryza glumipatula23.2825.8882.01139forward
CNT3053146Nymphaea colorataAmborella trichopoda25.1323.8185.33150forward
CNT30108688Nymphaea colorataOryza longistaminata23.2824.7882.73139forward
CNT30104475Nymphaea colorataOryza rufipogon23.2824.7382.73139forward
CNT30578401Nymphaea colorataOryza barthii23.2824.8782.73139forward
CNT30118085Nymphaea colorataOryza nivara23.2826.0382.73139forward

Expression of CNT30639598

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GYKSPPPLLGPWAVDKREEQVCGSSQKKGKKV*

>peptide 2 (48 aa)
MIYDVNSSLFRSFLSQKGSSAADKRKMEEQKPKEQKPKANENKPVMTE*

Sequence

>CNT30639598
GGGCTATAAAAGCCCGCCACCGCTTCTCGGCCCTTGGGCGGTAGACAAGAGAGAAGAACAAGTTTGCGGAAGCAGCCAGAAGAAGGGGAAGAAGGTTTAG
GGTTTTAACGTCCCAGGCCCCTTTCCGTTCCAATCGTGGTCGCCATGATTTACGACGTGAATTCTTCTCTCTTCCGATCCTTCCTCAGCCAGAAGGGAAG
CAGCGCCGCTGATAAGAGGAAAATGGAGGAGCAGAAGCCCAAGGAGCAGAAACCGAAAGCAAATGAAAACAAGCCTGTTATGACTGAGTGATGCGTCCGA
CTATGGAGTTCTCCCCCCCTTCCTGTTCTCTTTCCTGAAACTTGCGTGGTGGGTTCGAAATGTGAAAATCCAACTTCGTTCACCTGGATTGGCTGAATTA
ACGTGGTTTTATCTGGTTGCACGAAAATGAGGTTGAAACGTGAAACCTAACATGGCTATTTTAAGATCAACTTCTTGGTGGTGACTTGTTTTGCTCTTTT
TGTAGTATAGTACTTTGTGATGTTTATTTAATCCAGTCCGTATCTTTTAGACCCATCACACTCATTTTGATCCAATGAATGATGAGCTTAGCCCCAA