Detailed information on CNT30639490


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XT99|AKR2_ORYSJ, E-value = 3e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316626Nymphaea colorataCorylus avellana18.6524.2783.87124forward
CNT30703860Nymphaea colorataQuercus lobata18.3545.0284.43122forward
CNT30501551Nymphaea colorataCoffea canephora18.3527.1183.61122forward
CNT30543366Nymphaea colorataBrassica napus14.4421.1983.3396forward
CNT3059952Nymphaea colorataArabidopsis lyrata13.6827.0884.6291forward
CNT3076889Nymphaea colorataBrassica juncea13.6820.9783.5291forward
CNT30133477Nymphaea colorataLolium perenne10.2333.6689.7168forward
CNT30151782Nymphaea colorataPrunus persica19.122.1382.68127forward
CNT30570762Nymphaea colorataVitis vinifera14.2922.8983.1695forward

Expression of CNT30639490

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MMNPSQCKLGWCASLPSSDFMYTFKQIGIMLQILWLKSWQE

>peptide 2 (59 aa)
KNKTISTSFYYRNATKALSTTKGRYNSISQYTKAFNIKTVVYNKRKLQQFSPVYSIHST*

>peptide 3 (34 aa)
MSGYLSPLTASFEAICSSSVISSEVRVTDKAPIF*

>peptide 4 (40 aa)
MHQRIVQQPLWSKITRLSMRTKQVSLMPNKWDACLGTCLP*

>peptide 5 (78 aa)
RTKPSVHHFIIVMQQKHCLQQKEDTTVFPNILKHSTSKPLSIIRGNYNSFPQYTQYIPHNESQCFLYLYLHELIFTTL*

Sequence

>CNT30639490
TAAGAACAAAACCATCAGTACATCATTTTATTATCGTAATGCAACAAAAGCATTGTCTACAACAAAAGGAAGATACAACAGTATTTCCCAATATACTAAA
GCATTCAACATCAAAACCGTTGTCTATAATAAGAGGAAATTACAACAGTTTTCCCCAGTATACTCAATACATTCCACATAATGAGTCACAGTGCTTTCTT
TATTTATACCTCCACGAACTCATTTTCACCACACTTTAAGTACCATATTTTGCTTTATTAAAGTATTAAAATAGTCTTCAGATCATGCACCAAAGGATAG
TTCAACAGCCACTTTGGAGTAAGATTACTCGGCTTTCCATGAGGACAAAGCAGGTGTCTCTGATGCCAAATAAGTGGGACGCATGTCTGGGTACCTGTCT
CCCTTAACGGCATCCTTCGAAGCTATATGCTCAAGTTCTGTCATTTCTTCAGAGGTCAGGGTCACAGATAAAGCACCAATATTCTGATTCAGATTTTCAA
TCTTGGTGGTTCCAGGAATCGGGCAAACATCTTTCCCCTGATGATGAACCCAAGCCAATGCAAGCTGGGATGGTGTGCATCCCTTCCTAGCAGCGATTTC
ATGTACACGTTCAAACAGATTGGCATTATGTTGCAAATTCTCTGGCTGAAATCTTGGCAAGAACT