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Detailed information on CNT30639474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672342Nymphaea colorataSetaria viridis31.2131.6682.14196forward
CNT30499723Nymphaea colorataCoffea canephora21.8225.7580.29137forward
CNT30270249Nymphaea colorataChenopodium quinoa34.2410.7580215forward
CNT30493203Nymphaea colorataOlea europaea13.3821.5986.984forward
CNT30287901Nymphaea colorataTriticum aestivum21.3450.5785.82134forward
CNT30393905Nymphaea colorataTriticum turgidum16.563283.65104forward
CNT30314318Nymphaea colorataCamelina sativa11.7824.1887.8474forward
CNT30216Nymphaea colorataZea mays48.0998.0580.79302forward
CNT30608876Nymphaea colorataGossypium raimondii23.2527.1986.3146forward
CNT30689838Nymphaea colorataTriticum urartu17.9937.9284.96113forward

Expression of CNT30639474

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MCRHTSNDPELFISPPFFYPYTTPAHFEYTSC

>peptide 2 (43 aa)
MDARRTDQTMTIVDYEKGRWRNQKGGPLEHVELGKITIFIRSL*

>peptide 3 (42 aa)
MLKYNETIHSLQVQNIFNIDRCIISRQLLDDLIHPFQTHPSA*

>peptide 4 (54 aa)
MKQFTAYKYRTSSTSTGVSFPVNYWMISYILSRRIPQPSSLFHIVVCLALSPWL*

Sequence

>CNT30639474
GTGATCTTATGTTTTACGTTCAAAACGACCCTTTTCAACCGGGAGAGTACAAGATGGACTAACAAATAACAATAATTATAACAAAAATACAAAGCCGCTA
AGACAACCTTAGCCCTATTTAGACATGCTTAAATATAATGAAACAATTCACAGCTTACAAGTACAGAACATCTTCAACATCGACAGGTGTATCATTTCCC
GTCAACTATTGGATGATCTCATACATCCTTTCCAGACGCATCCCTCAGCCTAGCAGTTTATTCCACATTGTTGTGTGTTTGGCCCTGTCACCCTGGTTGT
GAATGGGTCAATCCGAACCCACAGCAGGGAGAAAATGGATGCAAGGAGAACAGACCAAACGATGACAATTGTTGATTATGAGAAGGGTCGTTGGAGGAAT
CAGAAGGGTGGTCCACTTGAACATGTAGAGCTCGGCAAAATCACCATCTTCATCCGAAGCCTTTGAAGTAACAGTGAAGTTGGTATCTATTCCAGCAAGC
ACCTTCAGCAACCCCTGAAACACAGCAAAGAGATGTGCCGACACACCTCCAATGACCCAGAACTGTTCATTTCTCCACCATTCTTCTATCCCTACACCAC
TCCAGCGCATTTCGAGTATACCAGTTGC