CANTATAdb - search

Detailed information on CNT30638954

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30628164	Capsicum annuum	Daucus carota	84.47	65.31	96.47	821	forward

Expression of CNT30638954

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSGPGSTPGGALPSIPLSFSLATILPPEPKNFDFS*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANVIGPKSYNVIPC*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQRNRTEIL*

Sequence

>CNT30638954
AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCATAGACATGTTATTGCCTTAAACTTTCGCAGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCCG
CGAAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCAC
CACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAA
GTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCCGATCCCTGGTC
GGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCA
GTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAA
CGTAATAGGACCGAAATCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGA
GGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGACAGAAGGGACGAGACGACCGGTGCACACCATAGGCGGACCGGCCGGCCCATCCCAAAGTC
CAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGT
TAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCATTGAGCCCGGTATTGTTATTTATTGTCACTAC