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Detailed information on CNT30638870


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30581628Capsicum annuumEchinochloa crusgalli7.3528.6584.6998forward

Expression of CNT30638870

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPHMPGNASMISNGEFPPLLALDKNQKLNNWHWRLK*

>peptide 2 (40 aa)
MCRIIHHKSFIRDCADGLTLLTVEIPRAEPVKKINTVSMF*

Sequence

>CNT30638870
CCGAAAGCAACACGCTCATCACCGAACCTGCTCTTGATCCGTTTGTAATTTGAGATATACGAGCACAGAATAACCCAAGATAGCAAGTCAGTGAGCTGTA
TGACTACGACATACAGAGGAAAATCCAGACTATTAAATATATATATTGGAAAGCAAGCAAACTCTTAAATGTAATGTTGCTTACATTAAGATTAAATAGT
ACAGCAGAGCAGACGAAACCAGACTAGAATCATAACCTTGTGTCAGGACCTAAGGGCCAAGGGCAGTCTCAGGTAGACAGTTATTATAGGTATAGGTCTT
CCAAAAGATAAAAGAGGTGTGCAAATGTTTCCTCGGGCCAGAGAAGATTGCAGCTCGAGTGCAAAGGTAGAAGGGAGTTTGATTGCAAGACTCACCCATG
AGTAGGACGAAAGGGTCGCAGATGGAATGCCACACATGCCTGGGAATGCCAGTATGATAAGTAACGGAGAGTTTCCACCTTTACTTGCCCTAGACAAAAA
TCAGAAGCTTAATAATTGGCATTGGCGACTCAAGTGACTGTTTTCTTACACTAGAAAATCAATGTGCAGAATTATACACCATAAAAGCTTTATAAGAGAC
TGCGCTGACGGGTTGACATTACTAACAGTTGAAATCCCCAGAGCAGAACCAGTAAAGAAAATAAACACAGTAAGCATGTTTTGATGCTGTAGATACAAAA
TTACTGTAGTTCGATGCATTCAGCAGGAAACTTATAGGGGGGAGGAGAAGCATTAATAGGAAAACACAGGAAACCAACGTTTTCTAATATTTTGATAGTG
ATTGTTTGGTTTAAGCTAAAAATAAATTTAACTTCCAAGCTTGTATTCATTCAACTCTTAATAGAAGAAAGGAGCCATCACATTGCATACAAAAAAGTTA
ATTTAAGCATCCAAGATGATGTCCTCACCTACAACTAATTGAGACCTCAAGAAATAGCAACTTAGAGGGCAACTTTTTACACCAACCAAGCTGACTGATA
AGGCAAATTATATTCTGGCAGAGAGGGATCGTGCAAGCAAGTCTGCAGGCACCTCTGATCAGATGAAATCTCTAAAACAGACAATGTTTGGAAAACAATG
GGAGTAGATTGATGGTAGTTCACCCCTAAAACATACAATGTGGAAGAAATAAACCGACTGAAAGATAGCAAACAATATTCTCCATTGAGTTGGGCAAAAG
TGCAAGGTTTTGATTTCACTGACAAAATTGTAAATAAAGTCTCACAAGGCAAATAATATCAGAAATAAGAGAACTACAAACTAAAGTTCAACAACGGGTG
CTCTATTAAGATCGACCAATTCCAGCTACTCAT