Detailed information on CNT30638517


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M5L6|CATA_CAPAN, E-value = 9e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501026Capsicum annuumCoffea canephora94.539.3680.03601forward

Expression of CNT30638517

Peptides detected in this lncRNA

>peptide 1 (93 aa)
SFSAKKLSMLLFNTNRPTGINGKISSGTIWPGLNASCSFSAKKLSMFLFNTNRPTGINGKISSGQVLVTSRGSKSNLSTSSGFIIWIKSFHSG*

>peptide 2 (99 aa)
LILCKEVIDVTIQYQSTNWHQWQDILRDNMARVKCELLVLCKEVIDVPIQYQSTNWHQWQDILRPGLGYVKRVKVEFVNILRVHNLDKKFPLRVVSSSN*

>peptide 3 (84 aa)
MISTSDPNSFFLRHGLDTASWLPVELHIMCFPSFVDQLISVNTKTFHVSVICRETNIIVEESKRMQTLREEREEIKDPPVFLNV*

>peptide 4 (50 aa)
MRAARSLQRSYRCSYSIPIDQLASMARYPQARSWLRQEGQSRICQHPQGS*

>peptide 5 (33 aa)
AHSLQRSYRCYYSIPIDQLASMARYPQGQYGQG*

Sequence

>CNT30638517
GCTCATTCTCTGCAAAGAAGTTATCGATGTTACTATTCAATACCAATCGACCAACTGGCATCAATGGCAAGATATCCTCAGGGACAATATGGCCAGGGTT
AAATGCGAGCTGCTCGTTCTCTGCAAAGAAGTTATCGATGTTCCTATTCAATACCAATCGACCAACTGGCATCAATGGCAAGATATCCTCAGGCCAGGTC
TTGGTTACGTCAAGAGGGTCAAAGTCGAATTTGTCAACATCCTCAGGGTTCATAATTTGGATAAAAAGTTTCCACTCAGGGTAGTTTCCAGCAGCAATTG
AATCGTAGAGATCCTTGGTGGCGTGGCTATGATTAGTACCTCCGACCCTAATAGCTTCTTCCTCCGTCATGGACTTGACACCGCAAGTTGGCTTCCAGTG
GAACTTCACATAATGTGCTTTCCCAGCTTTGTTGATCAATTGATAAGCGTGAACACCAAAACCTTCCATGTGTCTGTAATCTGTCGGGAGACAAACATCA
TCGTAGAAGAAAGCAAACGTATGCAAACTCTCCGGGAGGAAAGAGAAGAAATCAAGGATCCTCCAGTTTTCCTGAATGTGTGACTTTGGATTTGGTTTCA
ATGCACGAATCGTGTCAGGGAATGACTTTGCATCAC