Detailed information on CNT30636701


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Capsicum annuumSetaria italica36.9820.2782.89152forward
CNT30703138Capsicum annuumQuercus lobata66.9152.4877.82275forward
CNT3021362Capsicum annuumCitrullus lanatus94.8959.9182.82390forward
CNT3068683Capsicum annuumQuercus suber66.9155.8978.55275forward
CNT30182233Capsicum annuumSecale cereale36.524.1284.67150forward
CNT30222279Capsicum annuumHordeum vulgare34.5547.0284.51142forward
CNT30590847Capsicum annuumMusa acuminata79.0871.1280.62325forward
CNT3084565Capsicum annuumVigna radiata73.4817.8778.15302forward
CNT30510767Capsicum annuumSolanum lycopersicum62.2930.4492.58256forward
CNT30244810Capsicum annuumAvena sativa36.518.5686150forward
CNT30134072Capsicum annuumLolium perenne24.8214.0586.27102forward
CNT3066796Capsicum annuumLeersia perrieri45.9948.5982.01189forward
CNT30341003Capsicum annuumEragrostis tef39.966.6783.54164forward
CNT30595456Capsicum annuumOryza meridionalis34.7925.0985.31143forward
CNT30645151Capsicum annuumCannabis sativa50.1221.6282.04206forward
CNT30325711Capsicum annuumAsparagus officinalis76.1698.1280.19313forward
CNT30580107Capsicum annuumEchinochloa crusgalli36.528.984.67150forward
CNT30497454Capsicum annuumDigitaria exilis36.2540.0584.56149forward
CNT30594668Capsicum annuumEragrostis curvula39.948.6685.37164forward
CNT30336663Capsicum annuumCynara cardunculus93.6782.4485.19385forward
CNT3050773Capsicum annuumCucumis sativus65.6948.0480.74270forward

Expression of CNT30636701

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSNKLKSWISKMMHHIFFPPSKEIINNNNIITSLN*

>peptide 2 (48 aa)
TYWIHMTPIRFLLWVLKWIAINLTCTSKQEPRTNSLGKPQHVKGSHHI*

Sequence

>CNT30636701
ACACCTATTGGATTCACATGACCCCAATACGTTTCCTTCTGTGGGTGCTCAAGTGGATCGCCATAAACCTCACTTGTACTAGTAAGCAAGAACCTCGCAC
CAATTCTCTTGGCAAGCCCCAACATGTTAAGGGTTCCCATCACATTTGATATAATAGTTTTGACAGGATTATACTTATAGTGAACTGGCGAAGCAGGACA
AGCCAAGTGATAAATCTGATCTACTTCCAACAAAATAGGCTCAACAACATCATGTCTAATAAGCTCAAATCTTGGATTTCCAAAATGATGCATCACATTT
TCTTTCCTCCCAGTAAAGAAATTATCAATAACAATAACATCATCACCTCTCTTAATTAACTTATCAACTAAATGACTCCCAACAAATCCAGCACCACCAG
TTACAACAATC