Detailed information on CNT30636687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670613Capsicum annuumSetaria viridis17.435.5781.88138reverse complement
CNT30515079Capsicum annuumJuglans regia18.1628.1279.86144reverse complement
CNT30302990Capsicum annuumTriticum aestivum15.6443.6680.65124reverse complement
CNT309074Capsicum annuumZea mays17.447.9281.88138reverse complement

Expression of CNT30636687

Peptides detected in this lncRNA

>peptide 1 (95 aa)
SLSSCITVCSILTTTGVQDLVALMLTSLSFYVIFCSILTKWVFKIWPLVSFGTPILLHFDEMGVQDSVVILIFLRLRKAFATIGQGRRGGRKREI*

>peptide 2 (48 aa)
MYSAMLLTGWSISVEESGKLVDVGWPSVWVRTVLPKSVSKYLRKRCQI*

>peptide 3 (59 aa)
ITFILHNSLLHFDNDGCSRFGCPHVDFTLVLRNILLHFDKVGVQDLATRLIRHTHFTPF*

>peptide 4 (37 aa)
MEEQWSCIMSDMALSSRSVSNPTLPNRDYLMLKYLIF*

Sequence

>CNT30636687
ATCACTTTCATCCTGCATAACAGTTTGCTCCATTTTGACAACGACGGGTGTTCAAGATTTGGTTGCCCTCATGTTGACTTCACTCTCGTTCTACGTAATA
TTTTGCTCCATTTTGACAAAGTGGGTGTTCAAGATTTGGCCACTCGTCTCATTCGGCACACCCATTTTACTCCATTTTGACGAAATGGGTGTTCAAGATT
CTGTTGTTATTCTTATATTCTTAAGGCTCAGGAAGGCCTTTGCTACCATTGGACAAGGTCGACGAGGAGGAAGAAAAAGAGAGATCTAAATCAGTCTCAT
ACTCCTATTCTTTCTTCCACCTTATCTTTTCTCTTGCTAGTATGTACTCGGCAATGCTTCTAACAGGTTGGTCAATCTCTGTGGAGGAGAGTGGAAAATT
AGTAGACGTTGGGTGGCCATCTGTCTGGGTCAGGACCGTGTTGCCGAAGAGCGTATCAAAATACTTGAGAAAGAGGTGTCAAATATGAGATAAAATAAAG
AGGGTTCTTCAAGAGCGTGTAGAGTTAGAGGTACAACAACGACTAGAGCAAGAGGTTTCCCGTTTGAAGCAACAGAGTGATGATCGATTCAAATCTATGG
AGGAGCAATGGTCTTGCATAATGAGCGATATGGCATTATCTTCTCGCTCAGTTAGTAATCCTACTCTCCCTAATAGGGACTATCTAATGCTTAAATATTT
AATATTTTGAGAAATTAGTTACTTGAAGTGTCGACTTGAACATTGTCACACTCTTTTGGATAGTTATATGCTTTAAATTTTAAACATTGGTTG