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Detailed information on CNT30636154


BLAST search results

BLAST vs Swiss-Prot:
sp|P36181|HSP80_SOLLC, E-value = 1e-63

BLAST vs NONCODE:
NONSLYT002404, E-value = 9e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675624Capsicum annuumSetaria viridis28.3520.7683.97131forward
CNT30378101Capsicum annuumArabidopsis thaliana38.9620.4183.33180forward
CNT3019808Capsicum annuumCitrullus lanatus29.6520.4586.13137forward
CNT30729348Capsicum annuumCorchorus capsularis25.1112.8283.62116forward
CNT30379140Capsicum annuumManihot esculenta50.2227.5985.34232forward
CNT30526134Capsicum annuumPhaseolus vulgaris52.1637.8386.31241forward
CNT30630919Capsicum annuumVigna unguiculata52.1618.0985.06241forward
CNT30712340Capsicum annuumGlycine max27.0621.7492125forward
CNT3094874Capsicum annuumSolanum tuberosum50.4328.4893.13233forward
CNT30187977Capsicum annuumSecale cereale27.0617.3190.4125forward
CNT30394033Capsicum annuumTriticum turgidum27.069.2491.2125forward
CNT30560521Capsicum annuumActinidia chinensis43.2927.8285.5200forward
CNT30510227Capsicum annuumSolanum lycopersicum52.3820.6792.15242forward
CNT30145670Capsicum annuumMedicago truncatula29.6533.6686.86137forward
CNT30314068Capsicum annuumCamelina sativa49.3515.0483.77228forward
CNT3082269Capsicum annuumBrassica juncea49.3535.1982.89228forward
CNT30606420Capsicum annuumGossypium raimondii40.2632.5785.48186forward
CNT30652736Capsicum annuumRosa chinensis41.9933.5186.08194forward
CNT30625209Capsicum annuumDaucus carota49.3533.7885.09228forward
CNT30688537Capsicum annuumTriticum urartu16.0232.0391.8974forward
CNT30477326Capsicum annuumArabidopsis halleri38.9620.3683.89180forward
CNT30362691Capsicum annuumSorghum bicolor49.3523.0582.46228forward
CNT3055928Capsicum annuumAmborella trichopoda39.6120.8483.61183forward
CNT30551470Capsicum annuumOryza brachyantha31.633.5684.93146forward
CNT30113681Capsicum annuumFicus carica25.9716.4884.17120forward

Expression of CNT30636154

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLLPVISQTLIESSILFLCDLFRLPHPNGLLLVHQ*

>peptide 2 (38 aa)
MGFCLFTSDHSLETSLTFFFFFSSFSFSSSTSSTFPSSS

>peptide 3 (67 aa)
LFSAISKNSSTHFFTKFLRITFRILFCCNISLEMLRGRSSESTMPFTKLKYSGINSSQLSIINTRRT*

>peptide 4 (77 aa)
FVLSNFKEQLNTLFHQILANNLQDLVLLQHLSRDVKRKVLRIHNALHKAQIFRHQLLTVVHNKHTTNIELDIVGLLP*

Sequence

>CNT30636154
CTTTGTTCTCAGCAATTTCAAAGAACAGCTCAACACACTTTTTCACCAAATTCTTGCGAATAACCTTCAGGATCTTGTTCTGCTGCAACATCTCTCTAGA
GATGTTAAGAGGAAGGTCCTCAGAATCCACAATGCCCTTCACAAAGCTCAAATATTCAGGCATCAACTCCTCACAGTTGTCCATAATAAACACACGACGA
ACATAGAGCTTGATATTGTTGGGCTTCTTCCTTGAATCAAAGAGAAGTGCTTCACAGCCAAATGCTCCTCCCAGTCATTAGTCAAACTCTTATAGAAAGC
AGCATACTCTTCCTTTGTGATCTCTTCAGGCTTCCTCATCCAAATGGGCTTCTGCTTGTTCACCAGTGACCACTCATTGGAAACTTCTTTAACCTTTTTC
TTTTTCTTTTCTTCCTTCTCCTTTTCTTCATCAACCTCTTCTACCTTTCCCTCCTCATCTTT