Detailed information on CNT30635938


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30605389Capsicum annuumGossypium raimondii5192.882.62915forward
CNT30114615Capsicum annuumEutrema salsugineum50.7292.7683.96910forward

Expression of CNT30635938

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEKKPSNFSPSSAPPKQLDKKSRLFNSER*

>peptide 2 (30 aa)
MDDPFETIIANTYNHHNGRRNRTNTTTTNK*

>peptide 3 (30 aa)
HILTKEEQKNKKHGSLQTQDTNKRPIFIQI*

>peptide 4 (40 aa)
MVSELSTSKVMVLPVRVLTKICIPPRSLSTKWSVDSFWML*

>peptide 5 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

>peptide 6 (85 aa)
MERRLLLDVVVSEGSAVFELLSGEDQPLLVWGDSLLILNLGLDIVDGVGAFHLQGDGLSGESFHKDLHLQTTTNQTIKKRKKFQL*

>peptide 7 (71 aa)
MILLRPSLQTHITTTMGDETEPTRQPPTNRHHLKNHHGDGGQGAEWTPSGYCSQPRVRPSSSCLPAKINLC*

>peptide 8 (71 aa)
MKKTQAFPDPKQWKKNPQILALLQLLPNNWIKNRAYSTPKDEIKLLYNQNNEKNQIIRPFQLQTMKKKLTF*

>peptide 9 (53 aa)
MPSLSWILALTLSMVSELSTSKVMVFPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 10 (86 aa)
MVSELSTSKVMVFPVRVFTKICICKQQQTKRSKNEKNSNFKALSTLNEKLNYLTIKNNEKNSNFSVYSNPKDETELNNQSNGKLKL*

Sequence

>CNT30635938
ACACATTTTAACCAAAGAGGAACAGAAAAACAAAAAACACGGATCATTGCAAACACAAGACACCAATAAAAGACCAATCTTTATTCAAATATAAAAGAAA
CACAAGGGAACAGAAACATAAAAAGACATGGATGATCCTTTTGAGACCATCATTGCAAACACATATAACCACCACAATGGGCGACGAAACAGAACCAACA
CGACAACCACCAACAAATAGGCATCATCTTAAAAACCACCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGG
TACGCCCATCCTCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGT
GTCGGAGCTCTCAACCTCCAGGGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATACCACCACGGAGACGGAGAACAAGGTGAAGGGTACTC
TCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCATCTTCTAGCTGCTTTCCGGCAAATATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCT
GGATCTTGGCCTTGACGTTGTCTATGGTATCTGAGCTTTCCACCTCCAAAGTAATGGTCTTCCCTGTGAGGGTCTTAACAAAAATCTGCATACCACCGCG
AAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGC
TGGTCTGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCCACTTCCAAAGTAATGGTCTTGCCTGTGAGGG
TCTTAACGAAAATTTGCATCCCACCACGTAGCCTCAGCACCAAATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCTTCGAG
TTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCCACC
TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGCAAACAACAACAAACCAAACGATCAAAAAACGAAAAAAATTCCAACTTTA
AGGCTTTATCAACCCTAAACGAGAAATTAAACTATTTAACAATCAAAAACAACGAAAAAAACTCAAATTTTAGCGTTTATTCAAATCCGAAAGATGAAAC
TGAACTTAACAATCAAAGCAACGGAAAACTCAAATTATAGGGCTTGTTAAGCTCCCATACAATGAAAAAAACACAAGCTTTTCCAGATCCAAAACAATGG
AAAAAAAACCCTCAAATTTTAGCCCTTCTTCAGCTCCTCCCAAACAATTGGATAAAAAATCGCGCTTATTCAACTCCGAAAGATGAAATTAAACTACTTT
ACAATCAAAACAACGAAAAAAATCAAATTATAAGACCTTTTCAACTCCAAACAATGAAAAAAAAACTCACATTTTAGGGCCTTTTCAGCTTAAAACAAAT
TGGAAAAAAAAAAAAAAAACTCAATTTTAGAGGGCTTTTTCAGCTCCGAAACGATCGAAAAAAACTCAAATTCTAGGGCTATTTCAGCACCCAAAATAAC
AAATTAAAAAAACAAAAACAAAACATTGATGAAAATTTCTAACCTTGAACGAGAAATTTGAAGGCAATTGAGAGAGATTATGAAGAAAATAATT