Detailed information on CNT30633270


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Capsicum annuumSesamum indicum76.255.7197.16634reverse complement
CNT30197509Capsicum annuumPisum sativum75.4827.5992.83628reverse complement
CNT30221864Capsicum annuumHordeum vulgare39.916.3590.36332reverse complement
CNT30586133Capsicum annuumMusa acuminata41.2315.5186.3343reverse complement
CNT30541214Capsicum annuumBrassica napus37.26101.9791.94310forward
CNT30468144Capsicum annuumSaccharum spontaneum42.3112.5190.06352reverse complement
CNT30627916Capsicum annuumDaucus carota81.2518.7496.6676reverse complement
CNT30574574Capsicum annuumVitis vinifera63.715.7595.28530reverse complement
CNT30103415Capsicum annuumOryza rufipogon41.9535.1589.68349reverse complement

Expression of CNT30633270

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDKGTSESSLLGAGSPLPSIPLHSIVSYCTVPYQTR*

>peptide 2 (43 aa)
MISARAARRTTIVSLVTTRVELSQKVWYSSLSERASGISCKPP*

Sequence

>CNT30633270
TTTTGAGATCTTTATATTCGTAAGATCATAATAGAGTCCCTTTACTTTCTATTATATTAGTCAAGCGCTAGCGCCCTACAACTAGTATAGTATAGCAGAG
CAGCCAGCTTCAAAGCTTACCTGAAACAAATAAGAAGTATTCTAAAAAAAGAGAAAGGTTAGGGGGCTGAGAAGCTCTTGCTTGCTGCTTGCTGTCTACT
TCGCGAGCCTTCACTGCCCCGTTCTGTAACTTCCCTTCTTTCGTCCGTCCACGAGGCTGTAAAAAGAGAGAAAGGGGCGGCTATCTAGCGGGAGTCGTTT
CGGTTGTATGCCACGAGGTCCCTATGGACAAGGGGACAAGTGAATCATCGCTTTTGGGCGCAGGCAGCCCTCTACCATCTATCCCATTGCATTCCATCGT
CTCGTATTGTACTGTGCCGTATCAGACCAGATAGATCTATTGAGTGAGAGAAAGGGAGAAAACTCTAATTAGATATTCTTTTTATATTGATAGGGATCCC
CATTCATTCCTAGATTCCCGTCACTACGGACTTATTGTCCCTACCTAACTACATGGTAGTGGTCTAGGGAGCGCAATTGCTAGAGCACGGGAGAATGTTG
AGTAATGATTTCAGCAAGAGCAGCCAGACGGACTACTATAGTGAGTCTAGTGACTACTAGAGTAGAGTTAAGTCAAAAGGTATGGTATAGCAGCCTTTCC
GAGCGAGCCTCTGGGATCTCCTGTAAACCCCCATGATGTGGTAAAGGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGA
GGGGAGACCCTCACGTCCGGTTCGGAGGGCGG