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Detailed information on CNT30632746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676875Capsicum annuumSetaria viridis23.6526.6488.3171reverse complement
CNT30549212Capsicum annuumIpomoea triloba23.935.7397.11173reverse complement
CNT30270599Capsicum annuumChenopodium quinoa23.9310.6396.53173reverse complement
CNT30221828Capsicum annuumHordeum vulgare21.7217.992.36157reverse complement
CNT30383861Capsicum annuumTriticum turgidum23.9328.6992.49173forward
CNT30552690Capsicum annuumOryza glaberrima21.9910.3993.71159reverse complement
CNT30442196Capsicum annuumAegilops tauschii23.9320.493.06173forward
CNT30656195Capsicum annuumTriticum dicoccoides11.8933.4693.0286forward
CNT303548Capsicum annuumZea mays23.9312.1593.06173forward
CNT30410483Capsicum annuumPapaver somniferum27.669.7896.5200reverse complement
CNT30150154Capsicum annuumBrachypodium distachyon22.1313.9991.25160reverse complement
CNT30104374Capsicum annuumOryza rufipogon23.9313.0393.06173forward

Expression of CNT30632746

Peptides detected in this lncRNA

>peptide 1 (36 aa)
RGLISVRPEETFARLRYFLGGLRPIETVYLRLSLGP*

>peptide 2 (45 aa)
SRANLRPARGNLCTTPLLFGRPTPHRNCLPETVPWPVGPDTRLEF*

>peptide 3 (40 aa)
MARAPPEGGFLRPKANPRELDFFISVISFFCIALVYCFFP*

>peptide 4 (39 aa)
MWTLCTLRSPFGEITLGMLLSSLTPFPFLKKMYLVSRMS*

Sequence

>CNT30632746
CTCGAGGGCTAATCTCCGTCCGGCCCGAGGAAACCTTTGCACGACTCCGTTACTTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTC
CCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTCTAGCCCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGAGGCTTTCTTCGCC
CCAAAGCCAATCCCAGGGAACTTGACTTCTTCATTTCCGTTATTTCTTTTTTTTGTATTGCTTTGGTCTATTGCTTTTTCCCGTAAGGTATGTGGACACT
CTGTACTCTCCGGAGCCCATTTGGTGAAATTACTCTGGGTATGTTGTTGTCGTCTTTGACTCCATTTCCTTTTTTGAAAAAAATGTATTTAGTTTCAAGA
ATGTCCTAAAGTTTGTTCCTTTTTAGGTTGTGTTTGTAGTGGATTTTAGGAACATTAATATTTTTTTTGTGGATGAGTTATCCTTCTTTGGATAATGTGC
TTATGTAGAAAATTATGATTAAAAAAATTGGAATCTTTTGGGGTTAGTTAAATACTCCCTCTGTCCCATTTTAACTATCATTTTAGCTTTTTTCACGCCC
ATTTAAAAAAAAAATAGGTATAGTTTTTTAACTTATCCTTGTTTATTAGATGGTTTTTGGAAATTGAGTAGTATTTTTGAAAAACAGAATTACTTTCTTA
ACTAAAGGGAAACAATTATCAAC