« Back to Vigna unguiculata search


Detailed information on CNT30632300


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XX7|PETD_AMBTC, E-value = 1e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556068Vigna unguiculataOryza glaberrima50.252.4588.83385forward
CNT30662532Vigna unguiculataTriticum dicoccoides50.255.8888.05385forward
CNT30230699Vigna unguiculataAnanas comosus40.9453.7792.36314forward
CNT30215737Vigna unguiculataHelianthus annuus30.1275.7492.64231forward
CNT30622073Vigna unguiculataCajanus cajan49.5494.7696.05380forward
CNT3025179Vigna unguiculataPopulus trichocarpa41.8540.1294.39321forward

Expression of CNT30632300

Peptides detected in this lncRNA

>peptide 1 (41 aa)
GRRNGFWNLLTFSKKGTVNNPVGTETIKRTPNNLLGTVRSI*

>peptide 2 (37 aa)
MTHIHYKGPEMPCLRIIEKCININTAVRRGNTKVCKL*

>peptide 3 (34 aa)
MDGSRTAKPTLQAIVPRITTGKIYKRSLGHAGSP*

Sequence

>CNT30632300
GGGCGGCGAAATGGATTTTGGAATTTATTAACATTCTCCAAAAAGGGTACTGTTAATAATCCCGTAGGTACCGAAACCATTAAAAGAACGCCCAATAACT
TATTGGGCACTGTACGAAGTATTTGAAATACGGGAAAAAAATACCATTCAGGTAGTATTTCCAAAGGAGTTGCAAAAGGATCCGCAGGTTCCCCAATCAT
GGATGGTTCTAGAACCGCTAAGCCTACGTTACAGGCAATAGTACCTAGAATTACTACTGGAAAAATATATAAAAGATCGTTAGGCCATGCGGGTTCTCCA
TAATAATTATGACCCATTCCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAGTCAGGTTTTTTTGTTACTCCCATAATCCATTTTTTTTGGAGAA
TTCCCTTCAACTATTTTTGTATGTAAAAAAAATTCAATTTTTGTTAAGTTGAAGAAAAATATCTAAATACATGTTTTATTTTGTTTTATAATCCATAATT
GTAGCAATGAAAAAAAATCCTCCCCAAAATACAAAATGATAATGAAGTGATTACAAATATCTATGACCCATATTCACTATAAAGGACCAGAAATGCCTTG
CTTACGTATCATTGAAAAGTGCATTAACATAAATACAGCAGTAAGAAGAGGTAATACAAAAGTATGCAAACTATAAAAACGAGTTAAGGTAGATTGGCCC
ACACTGGAACTTCCGCGTAATAATTCTACCAAAGACGATCCTATTACAGGAATAGCTTCGGGTACGC