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Detailed information on CNT30632296


BLAST search results

BLAST vs Swiss-Prot:
sp|A4GGA6|RPOC1_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703171Vigna unguiculataQuercus lobata53.173.7387.87445forward
CNT3019361Vigna unguiculataCitrullus lanatus28.6778.6992.08240forward
CNT30202316Vigna unguiculataPisum sativum60.45101.8187.15506forward
CNT3085011Vigna unguiculataVigna radiata38.4799.3896.89322forward
CNT30314046Vigna unguiculataCamelina sativa10021.8487.22837forward
CNT3082978Vigna unguiculataBrassica juncea46.594.888.21390forward
CNT30129950Vigna unguiculataCorymbia citriodora2745.5688.05226forward
CNT3057109Vigna unguiculataAmborella trichopoda46.5917.3985.38390forward
CNT3039151Vigna unguiculataCucumis melo90.5688.6589.58758forward
CNT30100313Vigna unguiculataOryza rufipogon23.5486.484.26197forward

Expression of CNT30632296

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSYYTCQFYIAHLISTYSRIYKFYSALFTKFWVVLFISDYSIISTSTNPTFDRPKNSFTK*

>peptide 2 (50 aa)
MLCFQDWISYSNEPRNRKKVGFLTTGLANEKSPYTRLSNSFRGLSKRFAI*

Sequence

>CNT30632296
ATCTGAGCTCATTAATTTGCCCCCATCTATTTGAATAATCGGTCTCAATTCGGGAGGAAGAACTGGTAAGAGACATAAAACCATCCATTCTGGTTCTATA
TTTGTTCGTATAAAATGCTTAGCTAATTCTATACGCCGAACCAAAAAATTCTTTCTTCTTCCAACTTTTCGATCTTCCCATTCGTTTTCATTGTCCGGGG
ATCCCTCTTTCCCTAATTCTTTCCATTCTATCAACGAATAATCCATAATAATTCTCAAATCCAGATCGGCTAATTGTTCTCGGATAGCAACAGCTCCGCT
TGAAATTTCTCGATTTCGAAATATATCAAAACCTCGGGTAGTAAAAAAAAGTGGTATGCTGTGTTTCCAAGATTGGATTTCATATTCGAATGAACCTCGT
AATCGTAAGAAAGTGGGTTTTTTAACTACGGGTCTAGCAAACGAAAAATCGCCGTATACTAGACTTTCTAATTCTTTTAGAGGTTTATCTAAAAGATTTG
CGATATAACTAGGAAGACGTTTCAAATACCACGCATGAGTTACTACACATGCCAGTTTTATATAGCCCATTTGATATCTACGTATTCGAGAATCTATAAA
TTCTACTCCGCATTGTTCACAAAATTTTGGGTCGTCCTTTTTATCTCTGATTACTCGATAATTTCCACAAGCACAAATCCCACTTTTGATAGGCCCAAAA
ATTCTTTCACAAAATAATCCATCTTTTTCAGGTTTATTGGTTTTATAATGAAAAGTATAGGGTTTTTTTACCTCCCCCACTATCTCTCCATTAGGTAAGA
TTCTTTTTGCCCAAGCACTTATTTGTTGAGGAGAAAC