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Detailed information on CNT30632012


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 4e-10

BLAST vs NONCODE:
NONGMAT000264, E-value = 3e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526705Vigna unguiculataPhaseolus vulgaris47.6244.9792.86210forward
CNT30710461Vigna unguiculataGlycine max46.2630.1389.71204forward
CNT30653585Vigna unguiculataRosa chinensis22.91186.14101forward
CNT30620238Vigna unguiculataCajanus cajan46.9420.6689.37207forward
CNT30155224Vigna unguiculataPrunus persica24.7220.0784.4109forward
CNT3023278Vigna unguiculataPopulus trichocarpa23.1313.5385.29102forward

Expression of CNT30632012

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAFSVEKVTNPKPLDLPVSRSLIICKIKIHGNQI*

>peptide 2 (89 aa)
FHHHNHHFRHNHHLSFIHGNVPTVKVLTVHSFDRISHGLLGGKGHESKTPRPSSLTIVDNLQNKNPWKSDLRKNTKTKPNRTRSIFAFD*

Sequence

>CNT30632012
CTTCCACCACCATAACCACCACTTCCGCCATAACCACCACCTGAGCTTCATTCACGGTAATGTTCCGACCGTCAAGGTTCTGACCGTTCATTCCTTCGAT
CGCATCTCTCATGGCCTTCTCGGTGGAAAAGGTCACGAATCCAAAACCCCTAGACCTTCCAGTCTCACGATCGTTGATAATCTGCAAAATAAAAATCCAT
GGAAATCAGATCTAAGAAAAAATACGAAAACAAAACCGAATAGAACCCGATCGATCTTCGCCTTTGATTAAAGGATGAAGATGAACGTACCTATTGGCGT
GAGTAAAAAAAGAATCATATAGTAACACAAGTATCATAGATCAAGTAACGCAAAAAATATCAGAGATCACAGATCAGAACGGGATCGACAAATTCCGAAT
CCGAATCGTGTCAGATCAGATGCGGTGCCTGCGACAAACAG