Detailed information on CNT30632011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30563209Vigna unguiculataActinidia chinensis11.4121.1390.1471reverse complement

Expression of CNT30632011

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MGPLRRQGSPSSSPGGHPDGCICWLAHSKLRVEPWVLVPLLVPILEGTA*

>peptide 2 (78 aa)
KPHFPTQDLIFPSVSPTSSRVLDKLLFINSLTDAFVRRAGLRQLVTREGAPGCWNKVWSSSSWPDGCILLACPLQVES*

>peptide 3 (36 aa)
MGPLRKGLLVPKLEGTLMVASCWLAHLLACPLQVES*

>peptide 4 (32 aa)
MVASCWLAHSKLRVEPWVLCARVSWFLNWRAP*

>peptide 5 (44 aa)
MGPGSSPGSYTGGHRVRLFHGAATTSGSRQWRDHRLQAAAPSGH*

Sequence

>CNT30632011
AGAAGCCTCACTTTCCAACTCAAGACTTAATATTTCCGTCTGTAAGTCCCACATCGTCTAGAGTATTAGACAAACTACTCTTTATAAACTCTCTGACAGA
TGCGTTCGTTCGCCGAGCTGGGTTGCGTCAGCTTGTGACCCGAGAGGGGGCACCAGGGTGTTGGAACAAGGTTTGGTCTTCATCGAGCTGGCCTGATGGT
TGCATCTTGCTGGCTTGCCCACTCCAAGTTGAGAGTTGAGCCATGGGTCCTCTGCGCAAGGGTCTCCTGGTTCCTAAACTGGAGGGCACCCTGATGGTTG
CATCTTGCTGGCTTGCCCACTTGCTGGCTTGCCCACTCCAAGTTGAGAGTTGAGCCATGGGTCCTCTGCGAAGGCAAGGGTCTCCTAGTTCCTCTCCTGG
AGGGCACCCTGATGGTTGCATTTGCTGGCTTGCCCACTCCAAGTTGAGAGTTGAGCCATGGGTCCTGGTTCCTCTCCTGGTTCCTATACTGGAGGGCACC
GCGTGAGGCTGTTTCACGGAGCAGCGACAACCTCTGGCTCTCGACAGTGGAGGGATCACAGGCTGCAGGCTGCTGCACCTTCGGGCCATTGAGTTTGGTG
AGCCATCTCTTGAACCAACACT