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Detailed information on CNT30631336


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 6e-39

BLAST vs NONCODE:
NONBRAT002258, E-value = 2e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Vigna unguiculataOryza sativa43.8826.8781.73104forward
CNT30702777Vigna unguiculataQuercus lobata24.899.791.5359forward
CNT30586190Vigna unguiculataMusa acuminata35.0232.1785.5483forward
CNT30261311Vigna unguiculataBrassica rapa40.0824.9387.3795forward
CNT3017878Vigna unguiculataZea mays45.1515.4883.18107forward
CNT30477141Vigna unguiculataArabidopsis halleri41.3536.0383.6798forward
CNT30367502Vigna unguiculataSorghum bicolor45.1516.982.24107forward
CNT3036858Vigna unguiculataCucumis melo48.5220.1886.96115forward
CNT30557185Vigna unguiculataPanicum hallii37.1313.8484.0988forward

Expression of CNT30631336

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LIDLDTGNDVLLKKNVYDLVSVNDVLTKTGCCDK*

Sequence

>CNT30631336
CCTTATCGACCTTGATACCGGGAACGATGTTCTGTTGAAGAAGAACGTCTACGATCTTGTCTCCGTCAACGATGTATTGACCAAGACCGGGTGCTGTGAC
AAGTAGGGTACGGTACGCTTGACGGTTAGCCTCGGTGTTCTCCAACCCAATCGACGCCAAACGCTTCCCGCAGGTTGCATTTGACTCATCCATCGCCAAA
ATTCCACGCCCCGGCGAGGCCACTGTTTTCTACACTC