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Detailed information on CNT30630038


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43270|PLDA1_MAIZE, E-value = 6e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450970Vigna unguiculataSaccharum spontaneum43.0577.5781.63294forward
CNT30682318Vigna unguiculataTriticum urartu12.7426.5286.2187forward
CNT30571726Vigna unguiculataVitis vinifera38.5155.8479.85263forward
CNT30705729Vigna unguiculataPrunus avium15.2321.0582.69104forward

Expression of CNT30630038

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNVVPWFPWTTFFHRSVWKIRLMKIIVMRCSQRSEK*

>peptide 2 (36 aa)
SFNLTNYLKRKLLRDQMQSTNVFGLNAIRTPTVTAS*

>peptide 3 (33 aa)
PASILLTILSESSFGIRCKAPMSSGLMPSGLQP*

>peptide 4 (32 aa)
MLSFPLTSPTLAASSGVSGNPKAAPPSIDLNN*

Sequence

>CNT30630038
CCAGCTTCAATCTTACTAACTATCTTAAGCGAAAGCTCCTTCGGGATCAGATGCAAAGCACCAATGTCTTCGGGCTTAATGCCATCAGGACTCCAACCGT
AACAGCTTCCTAGGAAATACTGATTCTCAATATAGATGAAATTTTTCGCACGTCTAATGGCATTAACATAAGCATCTTGTATACTACGGTCTATTATGTT
ATCCTTTCCACTCACAAGCCCGACTCTAGCAGCTTCTTCGGGAGTCTCCGGGAACCCAAAAGCAGCTCCACCATCAATTGATCTGAATAACTGAACGTTC
CATGTCTCTCGATCATCAGGGTAAGTTACCGGTGATGGAGGAATAATCACATCTTCAAGGTCTCTCAGAGGAATCAGCAAGTCCTTTCCACCTTGCTTCC
TCCATCTCTGCTCAAAGTTGAACAAAACATCCCATGCAACTGGCCCTTCAAGCCGAGAATGAATGTCGTGCCATGGTTCCCTTGGACCACCTTTTTTCAC
CGTAGTGTGTGGAAAATTAGGTTGATGAAAATCATCGTGATGCGCTGTTCCCAGCGTTCTGAAAAGTGAGTGAAATTGTGTGTCGTATCTTCCATCACAG
AGATCAATCCCCCCCACAAAACTCACAATTCTTCGTTTATTATCTGATCTAGGTAAAGCACTGTCCACAACCACGATTTTCTG