« Back to Vigna unguiculata search


Detailed information on CNT30630024


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710708Vigna unguiculataGlycine max16.5526.5489.44142forward
CNT30585986Vigna unguiculataMusa acuminata16.3220.6285.71140forward
CNT30234912Vigna unguiculataBrassica oleracea21.138.9281.77181forward
CNT30474096Vigna unguiculataSaccharum spontaneum19.9344.8887.13171forward
CNT30621468Vigna unguiculataCajanus cajan22.73989.23195forward
CNT30572283Vigna unguiculataVitis vinifera17.4831.7881.33150forward
CNT30116505Vigna unguiculataOryza nivara18.5321.6980.5159forward

Expression of CNT30630024

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MMMSATTHFAHSVHSKWVILHTCFETKKGAKNCEKTRSIREAILQSRNLGERRHVEIEIQERASLGI*

>peptide 2 (34 aa)
MDKFSVAKKEAKARLLWVFVITYLHKRAGYLRAP*

Sequence

>CNT30630024
CAGAAACAACCATGAGATACTATGGATAAGTTCTCAGTTGCAAAAAAAGAAGCAAAAGCGCGTTTGCTATGGGTCTTCGTCATAACGTATTTACATAAAC
GTGCTGGTTATCTTCGCGCACCATAGTCAACAAATCCGAGCATGATGATGTCAGCTACTACTCACTTTGCTCATTCTGTCCATTCAAAATGGGTAATACT
ACACACATGCTTTGAAACAAAAAAAGGTGCGAAAAATTGCGAGAAAACCAGATCTATTCGTGAGGCAATTCTTCAATCACGCAACCTCGGGGAGAGGAGG
CACGTTGAGATCGAGATCCAGGAGCGCGCGTCGCTCGGAATTTGAGTCGCTGCGGCGGAAATCGGCCGCCGGACGTCCGAAGCCACAGGTGTCGCGGCGG
CCGACGGCGATTACTGTGTCCGCACGCGCGAAAGCATCGAAGAAGAGGACTGGACGTGCAGCGGGGAGGACCGAGGCGGTGGCGGCGGGGAGGAAGAGTC
GAGCGTGCTGCTCTGGCTAGGGCTACGCGCGCTGTTGTTGTTGCTGCTGCTGTGGTTGTTTACGAGAAGCTCGGAAGGTGTGGGGAAATTGGTCTTGGCT
TTGGCGCCTCGGAACTCGCGAGCGGCGGCGTCGTAGGCTCGTGCGGCTTCTTCGGCGGTGTCGAAGGTGCCTAGCCAAACGCGGGTTTTCTTGCCTGGGT
CGCGGATCTCCGCGGCGTAGCGGCCCCATGGGCGTTTCCTGACACCTCTGTAGCGGATCTCTTTGTGGGCCTGTGTTGGGCTTGGGCCGGGTCCGGCGAG
TGCGGTGGTTCTATCCCTTGGAGCCATTTCCTTGCAATTCAAATATACCAGGTTTTTT