Detailed information on CNT30628920


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 3e-154

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30114124Vigna unguiculataFicus carica86.3851.9278.36596forward

Expression of CNT30628920

Peptides detected in this lncRNA

>peptide 1 (55 aa)
GTMLYCDTVKNNRLNGKSRSKTKQYSPFKSFTCGFESIFSGFLPHLIQDKKHTCT*

>peptide 2 (45 aa)
MVSPGPKPNNTPHSSPSLVVLNPFSADFFLISSKIKSTHALDMFP*

>peptide 3 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTIIAAAPSPNSA*

>peptide 4 (39 aa)
MAFQSVELGQNQQSLQLLHLQTVLDPQDCLSGCHLGHER*

>peptide 5 (97 aa)
MCNPEDGVVIRDVQWIKGLRKCLPNVLRNNPRNILKEVKSESNFTKMPINGTFTVWSNGLCSPNKFKQWLFNLWNWVRTNNHCSCSISKQCLTHKTV*

Sequence

>CNT30628920
TGGGACAATGTTATATTGTGACACTGTGAAGAACAACCGTCTCAATGGTAAGTCCAGGTCCAAAACCAAACAATACTCCCCATTCAAGTCCTTCACTTGT
GGTTTTGAATCCATTTTCAGCGGATTTCTTCCTCATCTCATCCAAGATAAAAAGCACACATGCACTTGACATGTTCCCGTAGTCACTAAGCACATCTCTA
GTGGCCTTCATCTTTTCAGGTTTTAGACCCAACTTTTGCTCAACTTGGTCAAGAATTGCAGGCCCACCAGGATGTGCAATCCAGAAGATGGAGTTGTAAT
CAGAGATGTTCAATGGATTAAAGGCCTCAGAAAGTGCCTTCCCAATGTTCTTCGAAACAATCCCAGGAACATCCTTAAGGAGGTGAAAAGTGAGTCCAAC
TTCACGAAGATGCCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGTTCAAACAATGGCTTTTCAATCTGTGGAATTGGG
TCAGAACCAACAATCATTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTGTCTAAGTGGGTGTCACTTGGGCCACGAAAGGTGACTGCAG
TGATCTCAGAACACACGACAAGCACACGGGCACCCTTGTTGTTCTCAGCCAAATCCTTGGCCAATCGAAGAACCGTGCCTCCAGCAAAGC