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Detailed information on CNT30628905


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381108Vigna unguiculataManihot esculenta30.7478.6777.22439forward
CNT3074040Vigna unguiculataBrassica juncea17.5156.5682.8250forward
CNT30646903Vigna unguiculataRosa chinensis44.5448.1178.77636forward
CNT3030385Vigna unguiculataTheobroma cacao6.7924.3185.5797forward

Expression of CNT30628905

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTMTAAAPSPNSA*

>peptide 2 (40 aa)
MIILYLHAMENNGLNGKSWSKAKQDTPFKSFTCGFEFIFS*

>peptide 3 (51 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPNFGTSTTTMSCLASKEGAM*

>peptide 4 (45 aa)
MVSPGPKPNKTPHSSPSPVVLSLFSVDFLLISSKMKSTHALDMFP*

Sequence

>CNT30628905
TAAGAGAAACTTCAATATTATATATATAATTATTCTTTAAAATCTGAAAAAGAATTAAACAAAATCATACAAGTAATAAGAAAATGTTACATGATAATTT
TATATCTCCACGCTATGGAGAACAACGGTCTCAATGGTAAGTCCTGGTCCAAAGCCAAACAAGACACCCCATTCAAGTCCTTCACCTGTGGTTTTGAGTT
TATTTTCAGTTGATTTCCTCCTCATTTCATCCAAAATGAAAAGCACACATGCACTTGACATGTTCCCATAGTCACTAAGCACATCTCTAGTGGCCTTCAT
CTTTTCAGGTTTGAGACCCAACTTTTGCTCAACTTGGTCAAGAATTGCAGGTCCACCAGGGTGTGCAATCCAGAAGATGGAGTTGTAATCAGAGATGTTC
AATGGATCGAAGGCCTCGGAAAGTGCCTTCCCAATGTTCTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAAAAGTGAGTCCAACTTCACGAAGGT
GGCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAATGGCTTCTCAATTTGTGGAATTGGGTCAGAACCAAC
AATGACTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTATCTAGGTGAGTTTCACTTGGGCCACGGAAGGTGACTGCAGTGATCTCAGAA
CACACGACAAGCACACGGGCTCCCTTATTGTTCTCAGCTAAATCCTTGGCCAATCGAAGAACCGTGCCTCCTGCAAAGCACCCTTGTTGGTACATCATGT
ACCTCTTGACATAGGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTCGACGCCACTGGTGGTGCAAAAGATCAAGTGTGTAAT
CTTTGACTTTGGTTGTCCCCATTCCTTTATGGCCTTCACTGCAGCATCTTTCCCTAACTTTGGTACCTCTACCACTACTATGTCTTGCCTCGCATCCAAA
GAAGGTGCCATGTAAGCACACATGTTGGGATTCTCCTTCAGGACCTCCTCTGTCACGTGCATGTATCTCTTCTTGATCATCGACTTGTCGCCTGGAACAT
CATAAACCAAATATTAGCTTGATTCAACAATAGACATTATGAAACATCATGTGAAAGTGAAAAGAGTATACATATATTGATTCAAGAACTTACACATGCG
TTGGAACTTCTCCTTGAGATCGGTCATGTGCTCACTATTTGTAATTCTAAAGTAATAGTCGGGATAGGTGCTCTGATCAACACAGTTCGGTGGAGTAGCA
GTTCCAATTGCAAGGATGGTTGCAGGCCCCTCTGCCCTTTGAGCTTGACGGATCTCCGACACACTCACCATCTTCCTTTCCTTTGATATATGGAACTAAC
AATAGAAGTGGCAGATGATGTTGCTGAT