Detailed information on CNT30628855


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564019Vigna unguiculataActinidia chinensis30.6340.7681.46302forward

Expression of CNT30628855

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTMTAAAPSPNSA*

>peptide 2 (40 aa)
QKPRTMYYFDVKYNLRKLIHNNNNNNNKIIELGQCYIVTL*

>peptide 3 (39 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPNFGTSTTT

>peptide 4 (45 aa)
MLYCDTVKNNRLNGKSRSKTKQDTPFKSFTCGFESIFNRFPPHFI*

>peptide 5 (45 aa)
MVSPGPKPNKTPHSSPSPVVLSPFSTDFLLISSKMKSTHALDIFP*

Sequence

>CNT30628855
CTCAAAAGCCCCGAACCATGTATTACTTTGATGTAAAATACAACCTTCGAAAATTAATACATAATAATAATAATAACAACAATAAAATAATAGAGTTGGG
ACAATGTTATATTGTGACACTGTGAAGAACAACCGTCTCAATGGTAAGTCCAGGTCCAAAACCAAACAAGACACCCCATTCAAGTCCTTCACCTGTGGTT
TTGAGTCCATTTTCAACAGATTTCCTCCTCATTTCATCTAAAATGAAAAGCACACATGCACTTGACATATTTCCATAGTCACTCAGAACATCTCTAGTGG
CCTTCATCTTTTCAGGTTTGAGACCCAACTTTTGCTCAACTTGGTCAAGAATTGCAGGTCCACCAGGGTGTGCAATCCAGAAGATGGAGTTGTAATCAGA
GATGTTCAATGGATCGAAGGCCTCGGAAAGTGCCTTCCCAATGTTCTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAAAAGTGAGTCCAACTTCA
CGAAGGTGGCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAATGGCTTCTCAATTTGTGGAATTGGGTCAG
AACCAACAATGACTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTGTCTAGGTGAGTTTCACTTGGGCCACGGAAGGTGACTGCAGTGAT
CTCAGAACACACGACAAGCACACGGGCTCCCTTATTGTTCTCAGCTAAATCCTTGGCCAATCGAAGAACCGTGCCTCCTGCAAAGCACCCTTGTTGGTAC
ATCATGTACCTCTTGACATAGGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTCGACGCCACTGGTGGTGCAAAAGATCAAGT
GTGTAATCTTTGACTTTGGTTGTCCCCATTCCTTTATGGCCTTCACTGCAGCATCTTTCCCTAACTTTGGTACCTCTACCACTACT