« Back to Vigna unguiculata search


Detailed information on CNT30628839


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30507146Vigna unguiculataNicotiana attenuata37.3839.9478.59425forward
CNT3045136Vigna unguiculataPrunus dulcis25.5946.7882.82291forward
CNT30156272Vigna unguiculataPistacia vera60.3344.4980.32686forward
CNT3096581Vigna unguiculataSolanum tuberosum45.3827.6279.46516forward
CNT30610059Vigna unguiculataGossypium raimondii41.0768.3781.16467forward
CNT30705527Vigna unguiculataPrunus avium22.3454.8682.68254forward

Expression of CNT30628839

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTMTAAAPSPNSA*

>peptide 2 (35 aa)
MYYFDVKYNLRKLIHNNNNNNNKIIELGQCYIVTL*

>peptide 3 (53 aa)
MLYCDTVKNNRLNGKSRSKTKQDTPFKSFTCGFESIFNRFPPHFIQDEKHTCT*

>peptide 4 (45 aa)
MVSPGPKPNKTPHSSPSPVVLSPFSTDFLLISSKMKSTHALDIFP*

>peptide 5 (51 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPSFGTSTTTISCLASKEGAM*

Sequence

>CNT30628839
TCACAATGTATCATAAGTTATTAATTAGTCTCAAAAGCCCCGAACCATGTATTACTTTGATGTAAAATACAACCTTCGAAAATTAATACATAATAATAAT
AATAACAACAATAAAATAATAGAGTTGGGACAATGTTATATTGTGACACTGTGAAGAACAACCGTCTCAATGGTAAGTCCAGGTCCAAAACCAAACAAGA
CACCCCATTCAAGTCCTTCACCTGTGGTTTTGAGTCCATTTTCAACAGATTTCCTCCTCATTTCATCCAAGATGAAAAGCACACATGCACTTGACATATT
TCCATAATCACTCAAAACATCTCTGGTGGCCTTCATCTTTTCAGGTTTGAGACCCAACTTTTGCTCAACTTGATCAAGAATTGCAGGTCCACCAGGGTGT
GCAATCCAGAAGATGGAGTTGTAATCAGAGATGTTCAATGGATCGAAGGCCTCGGAAAGTGCCTTCCCAATGTTCTTTGAGACAATCCCAGGAACATCCT
TAAGGAGGTGAAAAGTGAGTCCAACTTCACGAAGGTGGCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAA
TGGCTTCTCAATTTGTGGAATTGGGTCAGAACCAACAATGACTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTGTCTAGGTGAGTTTCA
CTTGGGCCACGGAAGGTGACTGCAGTGATCTCAGAACACACGACAAGCACACGGGCACCCTTATTGTTCTCGGCTAAATCCTTGGCCAATCGAAGAACTG
TGCCTCCGGCAAAGCACCCCTGTTGGTACATCATGTACCTCTTGACATAGGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTC
GACACCACTAGTGGTGCAAAAAATCAAGTGTGTAATCTTTGACTTTGGCTGTCCCCACTCCTTTATGGCCTTCACTGCAGCATCTTTCCCTAGCTTTGGT
ACCTCTACCACAACTATATCTTGCCTCGCATCCAAAGAAGGTGCCATGTAAGCACACATGTTGGGATTCTCCTTCAGGACCTCCTCTGTCACGTGCATGT
ATCTCTTCTTGATCATCGACTTGTCGCCTGGAACATC