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Detailed information on CNT30628825


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30145784Vigna unguiculataMedicago truncatula88.2276.0184.95824forward

Expression of CNT30628825

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTMTAAAPSPNSA*

>peptide 2 (45 aa)
MVSPGPKPNKTPHSSPSPVVLSPFSTDFLLISSKMKSTHALDIFP*

>peptide 3 (57 aa)
YIIKTKQLSWETKLYWDTVKNNSLNGKSRSKTKQDTPFKSFTCGFESIFNRFPPHFI*

>peptide 4 (43 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPNFGTSTTTMSCL

Sequence

>CNT30628825
GTACATAATAAAAACAAAACAACTGAGTTGGGAGACGAAGTTATATTGGGACACTGTGAAGAACAACAGTCTCAATGGTAAGTCCAGGTCCAAAACCAAA
CAAGACACCCCATTCAAGTCCTTCACCTGTGGTTTTGAGTCCATTTTCAACAGATTTCCTCCTCATTTCATCTAAAATGAAAAGCACACATGCACTTGAC
ATATTTCCATAGTCACTCAGAACATCTCTAGTGGCCTTCATCTTTTCAGGTTTGAGACCCAACTTTTGCTCAACTTGATCAAGAATTGCAGGTCCACCAG
GGTGTGCAATCCAGAAGATGGAGTTGTAATCAGAGATGTTCAATGGATCGAAGGCCTCGGAAAGTGCCTTCCCAATGTTCTTTGAGACAATCCCAGGAAC
ATCCTTAAGGAGGTGAAAAGTGAGTCCAACTTCACGAAGGTGGCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCA
AACAATGGCTTCTCAATTTGTGGAATTGGGTCAGAACCAACAATGACTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTGTCTAGGTGAG
TTTCACTTGGGCCACGGAAGGTGACTGCAGTGATCTCAGAACACACGACAAGCACACGGGCTCCCTTATTGTTCTCAGCTAAATCCTTGGCCAATCGAAG
AACCGTGCCTCCTGCAAAGCACCCTTGTTGGTACATCATGTACCTCTTGACATAGGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGC
ATGTCGACGCCACTGGTGGTGCAAAAGATCAAGTGTGTAATCTTTGACTTTGGTTGTCCCCATTCCTTTATGGCCTTCACTGCAGCATCTTTCCCTAACT
TTGGTACCTCTACCACTACTATGTCTTGCCTCGC