Detailed information on CNT30628820


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 7e-155

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Vigna unguiculataQuercus lobata45.8585.2779.39359forward
CNT30485883Vigna unguiculataOlea europaea21.5858.2879.88169forward

Expression of CNT30628820

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAFQSVELGQNQQSLQLLHLQTVLDPQDCLSGCHLGHER*

>peptide 2 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTIIAAAPSPNSA*

>peptide 3 (73 aa)
MNYKFEIWYIIKTKQLSWETKLYWDTVKNNSLNGKSRSKTKQDTPFKSFTCGFESIFNRFPPHFIQDEKHTCT*

>peptide 4 (97 aa)
MCNPEDGVVIRDVQWIKGLRKCLPNVLRNNPRNILKEVKSESNFTKMPINGTFTVWSNGLCSPNKFKQWLFNLWNWVRTNNHCSCSISKQCLTHKTV*

>peptide 5 (45 aa)
MVSPGPKPNKTPHSSPSPVVLSPFSTDFLLISSKMKSTHALDIFP*

>peptide 6 (53 aa)
MHLTYFHNHSKHLWWPSSFQVLDPTFAQLGQELQAHQDVQSRRWSCNQRCSMD*

Sequence

>CNT30628820
GTTCTTATTAATTTGACAAAAAGGCTCCAAAGCATGTATCATGAATTACAAGTTTGAAATTTGGTACATAATAAAAACAAAACAACTGAGTTGGGAGACG
AAGTTATATTGGGACACTGTGAAGAACAACAGTCTCAATGGTAAGTCCAGGTCCAAAACCAAACAAGACACCCCATTCAAGTCCTTCACCTGTGGTTTTG
AGTCCATTTTCAACAGATTTCCTCCTCATTTCATCCAAGATGAAAAGCACACATGCACTTGACATATTTCCATAATCACTCAAAACATCTCTGGTGGCCT
TCATCTTTTCAGGTTTTAGACCCAACTTTTGCTCAACTTGGTCAAGAATTGCAGGCCCACCAGGATGTGCAATCCAGAAGATGGAGTTGTAATCAGAGAT
GTTCAATGGATTAAAGGCCTCAGAAAGTGCCTTCCCAATGTTCTTCGAAACAATCCCAGGAACATCCTTAAGGAGGTGAAAAGTGAGTCCAACTTCACGA
AGATGCCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGTTCAAACAATGGCTTTTCAATCTGTGGAATTGGGTCAGAAC
CAACAATCATTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTGTCTAAGTGGGTGTCACTTGGGCCACGAAAGGTGACTGCAGTGATCTC
AGAACACACGACAAGCACACGGGCACCCTTGTTGTTCTCAGCCAAATCCTTGGCCAATCGAAGAACCGTGCCTCCAGCAAAGC