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Detailed information on CNT30628786


BLAST search results

BLAST vs Swiss-Prot:
sp|P51431|R27AB_ORYSJ, E-value = 6e-48

BLAST vs NONCODE:
NONSTUT000620, E-value = 2e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674447Vigna unguiculataSetaria viridis46.7334.3890.39229forward
CNT30530180Vigna unguiculataEucalyptus grandis41.4338.5294.58203forward
CNT30316655Vigna unguiculataCorylus avellana51.2279.6892.43251forward
CNT30545885Vigna unguiculataIpomoea triloba51.8455.9590.94254forward
CNT30518728Vigna unguiculataJuglans regia51.6343.2590.51253forward
CNT30728895Vigna unguiculataCorchorus capsularis53.6736.2888.59263forward
CNT30285265Vigna unguiculataTriticum aestivum53.8835.1192.42264forward
CNT30220676Vigna unguiculataHordeum vulgare52.2445.4792.58256forward
CNT30586129Vigna unguiculataMusa acuminata45.5141.9291.03223forward
CNT30435195Vigna unguiculataAegilops tauschii53.8845.692.8264forward
CNT30656101Vigna unguiculataTriticum dicoccoides53.8835.4492.05264forward
CNT30456592Vigna unguiculataSaccharum spontaneum53.8832.1289.77264forward
CNT3067544Vigna unguiculataLeersia perrieri53.8816.0592.8264forward
CNT30623440Vigna unguiculataDaucus carota53.6713.2290.49263forward
CNT30720110Vigna unguiculataTriticum spelta52.2440.5192.97256forward
CNT30368046Vigna unguiculataSorghum bicolor53.8843.2893.18264forward
CNT30356771Vigna unguiculataLactuca sativa54.2924.5887.97266forward
CNT30369422Vigna unguiculataOryza glumipatula53.8820.1891.29264forward
CNT30571087Vigna unguiculataVitis vinifera44.4932.8889.91218forward
CNT30576569Vigna unguiculataOryza barthii53.8821.8292.05264forward
CNT30582668Vigna unguiculataEchinochloa crusgalli45.5138.4593.72223forward
CNT30499448Vigna unguiculataDigitaria exilis53.8834.9792.42264forward
CNT30116662Vigna unguiculataOryza nivara53.8811.6992.05264forward
CNT30594254Vigna unguiculataEragrostis curvula53.8831.8592.8264forward
CNT30725948Vigna unguiculataLupinus angustifolius54.2932.4889.47266forward

Expression of CNT30628786

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPSLSWILAFTLSMVSEDSTSRVMVFPVRVFTNICIVAET*

>peptide 2 (40 aa)
MSQFHSNKNNNILKKMRRASKFQSFTKTVQKEPIIPNFIY*

Sequence

>CNT30628786
CCTCAACATACAAAAACAACCTTATGAATAAGTATGAGTCAATTTCATTCTAACAAAAATAACAATATATTGAAGAAAATGAGGAGAGCATCAAAGTTTC
AAAGTTTCACCAAAACAGTACAAAAGGAACCTATCATTCCCAATTTTATATACTAATAAAACGACATTAATTAGAATTAAGCATCAGCTTTTTGATAAAC
ATAGGCTTGGTGTAGGTCTTCTTCTTCCGCTTCTTGGCTCCGCCGCGGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGA
GGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCTAT
GGTGTCCGAAGACTCCACTTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAATATCTGCATCGTTGCTGAGACCTAGGGTTTCGA