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Detailed information on CNT30628728


BLAST search results

BLAST vs Swiss-Prot:
sp|P49440|CHSY_PHAVU, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379505Vigna unguiculataManihot esculenta17.3429.7481.87171forward

Expression of CNT30628728

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSTPLVVQKIKCVIFDFGCPHSFMAFTAASFPNFGTSTTT

>peptide 2 (40 aa)
QKPRTMYYFDVKYNLRKLIHNNNNNNNKIIELGQCYIVTL*

>peptide 3 (42 aa)
MAPSLSGAMVCAVQTSSNNGFSICGIGSEPTMTAAAPSPNSA*

>peptide 4 (45 aa)
MVSPGPKPNNTPHSSPSLVVLNPFSADFFLISSKIKSTHALDMFP*

>peptide 5 (53 aa)
MLYCDTVKNNRLNGKSRSKTKQYSPFKSFTCGFESIFSGFLPHLIQDKKHTCT*

Sequence

>CNT30628728
CTCAAAAGCCCCGAACCATGTATTACTTTGATGTAAAATACAACCTTCGAAAATTAATACATAATAATAATAATAACAACAATAAAATAATAGAGTTGGG
ACAATGTTATATTGTGACACTGTGAAGAACAACCGTCTCAATGGTAAGTCCAGGTCCAAAACCAAACAATACTCCCCATTCAAGTCCTTCACTTGTGGTT
TTGAATCCATTTTCAGCGGATTTCTTCCTCATCTCATCCAAGATAAAAAGCACACATGCACTTGACATGTTCCCGTAGTCACTAAGCACATCTCTAGTGG
CCTTCATCTTTTCAGGTTTGAGACCCAACTTTTGCTCAACTTGGTCAAGAATTGCAGGTCCACCAGGGTGTGCAATCCAGAAGATGGAGTTGTAATCAGA
GATGTTCAATGGATCGAAGGCCTCGGAAAGTGCCTTCCCAATGTTCTTTGAGACAATCCCAGGAACATCCTTAAGGAGGTGAAAAGTGAGTCCAACTTCA
CGAAGGTGGCCATCAATGGCACCTTCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACAAGCTCAAACAATGGCTTCTCAATTTGTGGAATTGGGTCAG
AACCAACAATGACTGCAGCTGCTCCATCTCCAAACAGTGCTTGACCCACAAGACTATCTAGGTGAGTTTCACTTGGGCCACGGAAGGTGACTGCAGTGAT
CTCAGAACACACGACAAGCACACGGGCTCCCTTATTGTTCTCAGCTAAATCCTTGGCCAATCGAAGAACCGTGCCTCCTGCAAAGCACCCTTGTTGGTAC
ATCATGTACCTCTTGACATAGGGGCGAAGTCCGAGGAGTTTGGTGAGCTGGTAATCAGCACCAGGCATGTCGACGCCACTGGTGGTGCAAAAGATCAAGT
GTGTAATCTTTGACTTTGGTTGTCCCCATTCCTTTATGGCCTTCACTGCAGCATCTTTCCCTAACTTTGGTACCTCTACCACTACT