Detailed information on CNT30628476


BLAST search results

BLAST vs Swiss-Prot:
sp|P30078|CHSY_MALDO, E-value = 1e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30486019Vigna unguiculataOlea europaea22.6529.5379.53171forward
CNT30712527Vigna unguiculataGlycine max35.156.7586.04265forward
CNT30192533Vigna unguiculataSecale cereale23.4426.582.49177forward
CNT3088050Vigna unguiculataVigna radiata39.8759.9691.69301forward
CNT30466546Vigna unguiculataSaccharum spontaneum30.0785.3482.38227forward
CNT30680228Vigna unguiculataTriticum urartu14.322.8881.48108forward
CNT30365392Vigna unguiculataSorghum bicolor30.0739.1482.38227forward

Expression of CNT30628476

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHSTCFHTRSERAEWTGVSPVSAGASPQPDPESPVHPDVQSRRSSSSH*

>peptide 2 (44 aa)
SSFDFFLISSRMNKTHALDMFPYSLRTCRVDRSFSGFSRSFSST*

>peptide 3 (41 aa)
MLVQPPSSARRWHHQSPAEWSGRPTPFQISAVLHSCQDPLR*

>peptide 4 (32 aa)
MVAGPWERWALRISSTDTIWRSVVVGDEKRKQL

>peptide 5 (98 aa)
MFFEMIPGTSFRRWNVSPTSLKCPSMAPSESGRMVWEADTISNIGRSTLLSGSAPMIIAAEDRPAGEAALLVHHQTLHGGPQPEKLSQLVIRSGHVDA*

>peptide 6 (92 aa)
LLRLLPHFIKNEQNTCTRHVSILAQNVPSGPEFLRFQPELLLNLIQNRRSTRMCNPEDRVPVINSNRRKRLRQTLLNVLRDDSGHVFQEMEC*

Sequence

>CNT30628476
TCCTCCTTCGACTTCTTCCTCATTTCATCAAGAATGAACAAAACACATGCACTCGACATGTTTCCATACTCGCTCAGAACGTGCCGAGTGGACCGGAGTT
TCTCCGGTTTCAGCCGGAGCTTCTCCTCAACCTGATCCAGAATCGCCGGTCCACCCGGATGTGCAATCCAGAAGATCGAGTTCCAGTCATTAATTCCAAT
CGGCGCAAACGCCTCCGTCAGACTCTTCTCAATGTTCTTCGAGATGATTCCGGGCACGTCTTTCAGGAGATGGAATGTTAGTCCAACCTCCCTCAAGTGC
CCGTCGATGGCACCATCAGAGTCCGGCAGAATGGTCTGGGAGGCCGACACCATTTCAAATATCGGCCGTTCTACACTCCTGTCAGGATCCGCTCCGATGA
TCATCGCGGCGGAGGACCGTCCCGCCGGCGAAGCAGCCCTGCTGGTACATCATCAGACGCTTCACGGAGGGCCTCAGCCCGAGAAGCTTAGTCAGCTGGT
AATCCGCTCCGGGCATGTCGACGCCTGAAGTGGTGCAGAACACCAGGTGAGTGATCTTTGACTTGGGTTGACCCCATTCCTTTATCGCCTTCCTCGCCGC
TTCTTTTCCCAGCTTCGGCACTTCCACCACCACTATATCCTGCCTCACGCGAGAATGGTGGCGGGGCCATGGGAGCGCTGGGCGTTGCGGATTTCCTCGA
CTGACACCATCTGGAGGAGTGTGGTGGTTGGGGATGAGAAGAGAAAGCAGTTAGA