« Back to Vigna unguiculata search


Detailed information on CNT30628401


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677790Vigna unguiculataSetaria viridis24.1119.7686.4281forward
CNT30519871Vigna unguiculataSetaria italica30.9515.7181.73104forward
CNT30315797Vigna unguiculataCorylus avellana26.4913.4683.1589forward
CNT30547549Vigna unguiculataIpomoea triloba26.4911.585.3989forward
CNT30700039Vigna unguiculataQuercus lobata30.0620.6584.16101forward
CNT30376827Vigna unguiculataArabidopsis thaliana39.5856.3688.72133forward
CNT3069241Vigna unguiculataQuercus suber25.619.5583.7286forward
CNT30380641Vigna unguiculataManihot esculenta25.612.4583.7286forward
CNT30200358Vigna unguiculataPisum sativum23.8112.8683.7580forward
CNT30712448Vigna unguiculataGlycine max40.483289.71136forward
CNT30125320Vigna unguiculataPhyscomitrium patens39.5813.6781.95133forward
CNT30177168Vigna unguiculataSecale cereale30.951481.73104forward
CNT30284356Vigna unguiculataTriticum aestivum30.9516.1281.73104forward
CNT30221211Vigna unguiculataHordeum vulgare38.3911.2182.95129forward
CNT3084175Vigna unguiculataVigna radiata30.959.9883.65104forward
CNT30255062Vigna unguiculataAvena sativa38.127.2980.47128forward
CNT30657055Vigna unguiculataTriticum dicoccoides30.9519.8981.73104forward
CNT30447268Vigna unguiculataSaccharum spontaneum40.4834.8784.56136forward
CNT30141675Vigna unguiculataLolium perenne38.114.3382.03128forward
CNT30606039Vigna unguiculataGossypium raimondii37.826.7983.46127forward
CNT30720171Vigna unguiculataTriticum spelta31.8516.6182.24107forward
CNT30361473Vigna unguiculataSorghum bicolor33.9321.1985.96114forward
CNT30596421Vigna unguiculataOryza meridionalis38.118.2381.25128forward
CNT30154413Vigna unguiculataPrunus persica32.1427.9186.11108forward
CNT30414942Vigna unguiculataPapaver somniferum29.1712.0585.7198forward
CNT3058538Vigna unguiculataAmborella trichopoda26.498.2585.3989forward
CNT30585391Vigna unguiculataEchinochloa crusgalli30.9515.9881.73104forward
CNT30114434Vigna unguiculataEutrema salsugineum38.3932.4181.4129forward

Expression of CNT30628401

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MTRHHLQPLPFTTTNLPHQLNVFGHNCYTLSMNGTKVSVLEESNKVCLSGFLQCKHCVTLETQ

Sequence

>CNT30628401
GTCCAAAATTCAATTACAAGCCATTTCCATAAAGACAGTAGTCACCACCTTTAGAAGTATTTGCCTATTTCACAATTAATGACACTACGAGTAAACACCT
ACTCCCTAACAAGCTACCCTCAGAAGAAAAAAAAAACGAAATTTGAATGACAAGACACCATCTGCAGCCACTCCCTTTCACAACTACAAACCTACCACAT
CAGCTGAATGTCTTTGGGCATAATTGTTACACGCTTAGCATGAATGGCACAAAGGTTAGTGTCCTCGAAGAGTCCAACAAGGTATGCCTCAGCGGCTTCT
TGCAGTGCAAGCACTGCGTGACTCTGGAAACGCAGA