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Detailed information on CNT30628366


BLAST search results

BLAST vs Swiss-Prot:
sp|P50246|SAHH_MEDSA, E-value = 6e-57

BLAST vs NONCODE:
NONGMAT001730, E-value = 2e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671211Vigna unguiculataSetaria viridis9.0361.1487.6129forward
CNT30639595Vigna unguiculataNymphaea colorata17.8454.0381.96255forward
CNT30517189Vigna unguiculataJuglans regia10.1537.2888.28145forward
CNT30702258Vigna unguiculataQuercus lobata13.164086.7188forward
CNT30375086Vigna unguiculataArabidopsis thaliana12.9525.885.95185forward
CNT3070573Vigna unguiculataQuercus suber13.1625.0786.7188forward
CNT30380227Vigna unguiculataManihot esculenta13.1645.0885.64188forward
CNT30200315Vigna unguiculataPisum sativum11.4831.7890.24164forward
CNT30505192Vigna unguiculataNicotiana attenuata8.7522.1286.4125forward
CNT30709695Vigna unguiculataGlycine max6.4427.5496.7492forward
CNT30221157Vigna unguiculataHordeum vulgare11.9781.4392.4171forward
CNT30585997Vigna unguiculataMusa acuminata7.743.4887.27110forward
CNT3084173Vigna unguiculataVigna radiata14.7730.3294.79211forward
CNT30543653Vigna unguiculataBrassica napus12.9526.8183.24185forward
CNT30511017Vigna unguiculataSolanum lycopersicum8.7520.9780.8125forward
CNT30144739Vigna unguiculataMedicago truncatula10.5732.5480.13151forward
CNT30435910Vigna unguiculataAegilops tauschii12.0421.5892.44172forward
CNT30659902Vigna unguiculataTriticum dicoccoides13.361.6991.58190forward
CNT3076654Vigna unguiculataBrassica juncea12.9539.6183.78185forward
CNT30259492Vigna unguiculataBrassica rapa8.6835.3383.06124forward
CNT30612249Vigna unguiculataArabis alpina12.9570.8883.24185forward
CNT30601056Vigna unguiculataFraxinus excelsior9.7325.6984.89139forward
CNT308389Vigna unguiculataZea mays10.8571.182.58155forward
CNT30651401Vigna unguiculataRosa chinensis10.9258.2191.03156forward
CNT30680065Vigna unguiculataTriticum urartu726.3985100forward
CNT30720265Vigna unguiculataTriticum spelta7.7740.8192.79111forward
CNT30365573Vigna unguiculataSorghum bicolor16.3866.2980.77234forward
CNT30570586Vigna unguiculataVitis vinifera13.327.5483.68190forward
CNT30705212Vigna unguiculataPrunus avium8.6833.783.87124forward
CNT30645006Vigna unguiculataCannabis sativa12.9522.4882.16185forward
CNT30103950Vigna unguiculataOryza rufipogon17.5673.3984.06251forward
CNT30117878Vigna unguiculataOryza nivara6.4420.4484.7892forward
CNT30723196Vigna unguiculataLupinus angustifolius12.9523.2190.81185forward
CNT3065844Vigna unguiculataSelaginella moellendorffii9.3838.485.82134forward

Expression of CNT30628366

Peptides detected in this lncRNA

>peptide 1 (31 aa)
RQPSHQGAWAKHKPSSHTSHCSSPSTTQAEQ*

>peptide 2 (34 aa)
MTAPIQVVKLSQTTDQKVKQTITAKANYHEQQNQ*

>peptide 3 (37 aa)
MTTLLLSKTIQTTDKMQLSWVNSSKFDSDFEMIQHTI*

>peptide 4 (52 aa)
MTWLVKEQDITKLGCPVAHPKFIKRPSAKTMMPHNPFRHHRIQPPQPPSRQS*

>peptide 5 (65 aa)
MRRVASPPSSTMRVSMSTAVWMVMWREPVMRAPLKGCDGPNSARQAMRPGISTSARSSSRRPKSA*

>peptide 6 (95 aa)
GNLLIKVLGQNINLLLILPTVLLLPQLKLSNDLVGEGAGHHKTGVSCSTSQVHQTTLGQDNDAAQPFPTSPYPATTATFPAIITSVALIRPSGRE*

Sequence

>CNT30628366
CGGCAACCTTCTCATCAAGGTGCTTGGGCAAAACATAAACCTTCTTCTCATACTTCCCACTGTTCTTCTCCTTCCACAACTCAAGCTGAGCAATGACCTG
GTTGGTGAAGGAGCAGGACATCACAAAACTGGGGTGTCCTGTAGCACATCCCAAGTTCATCAAACGACCCTCGGCCAAGACAATGATGCCGCACAACCCT
TTCCGACATCACCGTATCCAGCCACCACAGCCACCTTCCCGGCAATCATAACATCAGTAGCCCTCATCAGACCATCGGGCAGAGAATGACGGCACCCATA
CAAGTTGTCAAACTGTCACAAACCACAGATCAAAAGGTTAAACAAACAATAACAGCAAAAGCCAATTACCATGAACAACAAAATCAATGACCACCCTCTT
GCTTTCAAAAACCATACAAACAACTGATAAAATGCAGTTAAGTTGGGTGAACAGTTCAAAATTTGATTCGGATTTTGAAATGATACAACATACAATTTGA
TTCAAAAGACAGTCAACAGTAAAATTCTGTTCACCTAAGTTACCTAGAGCTACTTCAAATCAATTCCTTGATGTAATTTCAGATTAACACCAATCCAAAC
TTCTTTCAGAACATTAGTCAAACAGTTAACAGATTCAAAAGTTCATTTCACCAATGCCACAAATCCCACTAAAACCGACAGATCTGAATCGAGCTCAACA
TTAGTTAATCAGTTAACAGATTCAAGAATCCATTTCACCAATGCCACAAATCCCTTAAAACATACAGATCCGAATCGAGCTCAGCGTATAAACACTCAAA
AAGTAACAGATCTGGAAAAAAAATATCTAGAAGCAACCAAAAATACCTTGCTTTTGGTGACAGAGTCATTGACATTGATAGCAGGGAACAGAAGAGTTCC
ATTGGCCTGCATCTGATACAGCCTCTTCACACCAGTGGTGGTCTCCTCAGAAACCCCAACGAGACGCTCCTTCATCTTGCGGTACCTGGAGGGGTCGGTC
TTCAACCCATCTCTGATGATGGTAAGCACGATCTGGAACTCAGCGTTGTCAGTGGAAGCGGGGTCGGGGAGCTCGCCGGTTTTCTCATAGAGCTCCTCGG
CCTTGACACCCTCGTGGATGAGGAGGGTGGCGTCACCGCCGTCGTCGACGATGAGGGTCTCAATGAGCACGGCGGTCTGGATGGTCATGTGGAGGGAGCC
GGTGATGCGGGCCCCCTTGAAGGGCTGCGATGGGCCGAACTCAGCCCGGCAGGCCATGAGGCCCGGCATCTCGACCTCCGCGAGATCGAGCTCGAGGCGC
CCGAAGTCGGCCTGAGAAAGGTCCTTGACCTTGTACTCGCGGCCGCTTGTGGTTTTCTCCACCAATAGAGACATGGTTGCGCAGCAGCGAGAGAGAGAGA
AAGAAAGAAGAGTGAGTGGGGTTTAGAGA