Detailed information on CNT30628273


BLAST search results

BLAST vs Swiss-Prot:
sp|Q37550|ATP9_MALDO, E-value = 2e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537800Daucus carotaEucalyptus grandis34.656.1282.46211forward
CNT30550185Daucus carotaIpomoea triloba34.6549.8887.2211forward
CNT3020733Daucus carotaCitrullus lanatus20.6927.4590.48126forward
CNT30221525Daucus carotaHordeum vulgare34.6525.0988.15211forward
CNT30141896Daucus carotaLolium perenne35.317.889.3215forward
CNT30688279Daucus carotaTriticum urartu34.6519.9489.57211forward
CNT30484721Daucus carotaChara braunii23.9711.6583.56146forward
CNT3036889Daucus carotaCucumis melo36.6212.9283.41223forward
CNT30104673Daucus carotaOryza rufipogon34.3229.8189209forward

Expression of CNT30628273

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MYVSNNKILCLIREFSSRFFLLFVLESQFDRLFPSSRHKAIFHSLNTNLILFLSFLSNLNHESQSMLASFLHRAWTMSPEQS

>peptide 2 (49 aa)
SCDSGGSHPARNTELPTYHLIQKNQTLVVLSIYKLTIFDIDSILNLEYR*

Sequence

>CNT30628273
TTCCTGTGACTCAGGAGGGTCGCATCCGGCTAGAAACACCGAACTACCTACATATCATCTTATTCAGAAGAATCAGACCCTTGTAGTTCTATCAATCTAT
AAGCTTACAATATTCGATATAGACTCTATTTTAAATTTGGAATACAGATAAGATCAGAAAAGCCATCATTAGAGCAAACAATGCAATAGCCTCTGTCAGC
GCAAAGCCTAAAATGGCATAACCAAATAATTGTTTTGCCAATGATGGATTGCGTGCTACAGAATGAATCAAAGAACTGAAAACGTTTCCAATTCCAATAG
CAGCTCCCGCCAAAGCAATTGTAGCAGCTCCGGCACCTATTGATTTTGCACCTTCTAACATAATGTATGTATCTAATAATAAAATTCTTTGTCTAATTAG
AGAATTCTCGTCACGCTTTTTTCTTTTATTTGTTTTAGAGTCACAATTTGATAGACTCTTCCCCTCCTCTCGTCATAAAGCTATCTTTCACTCACTTAAC
ACTAACTTAATCCTTTTTCTTTCTTTTTTGTCGAATCTTAACCATGAAAGTCAGTCAATGTTGGCTTCATTTCTTCACCGGGCTTGGACCATGTCTCCCG
AACAATCTC