Detailed information on CNT30628236


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0G9W6|PSBC_DAUCA, E-value = 8e-177

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Daucus carotaOryza sativa20.5215.8588.34223forward
CNT30730376Daucus carotaCorchorus capsularis16.143.8690.86175forward
CNT30196267Daucus carotaPisum sativum54.3752.9691.88591forward
CNT30284073Daucus carotaTriticum aestivum78.6627.1690.76855forward
CNT30563336Daucus carotaActinidia chinensis10.5856.9396.52115reverse complement
CNT30539896Daucus carotaBrassica napus29.3518.392.79319forward
CNT30236105Daucus carotaBrassica oleracea47.7563.2293.06519forward
CNT30441515Daucus carotaAegilops tauschii20.5234.6889.69223forward
CNT30257701Daucus carotaAvena sativa50.9779.8390.79554forward
CNT30607747Daucus carotaGossypium raimondii31.0984.7192.31338forward
CNT30367840Daucus carotaSorghum bicolor20.4249.4490.99222forward
CNT30425595Daucus carotaPapaver somniferum20.738.4691.11225forward
CNT30109402Daucus carotaOryza longistaminata20.5216.9389.24223forward
CNT30120788Daucus carotaCitrus clementina16.4784.4386.03179reverse complement
CNT30100129Daucus carotaOryza rufipogon20.5221.2489.24223forward
CNT30116778Daucus carotaOryza nivara41.3168.2490.65449forward
CNT30557406Daucus carotaPanicum hallii20.753.3288.89225forward

Expression of CNT30628236

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LQFLFQTPLQLHEPFLRATNDLRTRRILEQNEK*

>peptide 2 (31 aa)
MEPNHTCPPIISSKSSTLTIHPSPPKGDFSK*

>peptide 3 (40 aa)
MEKILQASQVLEVHDKYHQSPILQRKLNEVLQIQNMEKCL*

Sequence

>CNT30628236
GCTCCAATTCCTTTTTCAAACCCCGCTGCAGCTGCACGAGCCCTTCCTGCGTGCCACAAATGACCTACGAACAAGAAGAATCCTAGAACAAAATGAGAAG
TAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTGATCTCGGTAGCTACACCACCCACGGAATTTAAAGAACCTAAAGGGGCATGAGTCATATA
TTCTGCAGAGCGCCGTTCTTGCCAAGGTTTGGTTAAGATATGCCAGATTCCACCAAATATACAAATGGAACCTAACCATACATGTCCTCCGATTATATCT
TCCAAATCGTCTACACTAACAATCCACCCTTCCCCTCCAAAAGGGGATTTTAGTAAATAACCAAATATAATACTTGGGTTAAGGGTCAAGTTGGTAATTT
TTCTTACATCTCCCCCTCCCGGAGCCCAGGTATCATAGACACCACCAAAATAAAGAGCCTTGAATACTAGAAGAAAAGCTCCTATACCTAACAAGATTAA
GTGAATACCTAAAATTGTGGTCATTTTATTTCTATCTTTCCATACATAACCGAAGAATGGAAAAGATTCTTCAAGCGTCTCAGGTCCTAGAAGTGCATGA
TAAATACCACCAAAGCCCAATACTGCAGAGGAAATTAAATGAAGTACTCCAGATACAAAATATGGAAAAGTGTCTATAACTTCCCCACCAGGACCTACTC
CCCAACCTAGAGTAGCTAGGTGAGGAAGTAAAATTAATCCTTGTTCATACATAGGCTTTTCTGGTACGAAATGAGCCACTTCAAATAGGTTCATTCCTCC
GGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCCCCTAGTAGTTTACCGGATAAATTGATAAGCCGGGCATTCCCGGCCCACCAAGCGAAACCG
GTGGTTTCTTGGTCACGACCAGCTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGGTTTCATGAGGCTGA
TCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTTGTGTAGAAAGTCTCAAATTCAGGATCTTCTGCCGCG