Detailed information on CNT30628228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730588Daucus carotaCorchorus capsularis32.8963.5897.55693reverse complement
CNT30196854Daucus carotaPisum sativum32.5649.2596.79686forward
CNT3027140Daucus carotaPopulus trichocarpa32.0453.4998.07675forward

Expression of CNT30628228

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MSKRYISTHYSTQSATDFRRGHISRKSMDQVHNRLPVPHSRFPSTHGLPTLTRPKGNERAEDHVRFIVSLAQNKMHKTN*

>peptide 2 (44 aa)
MHPFQKSGFVARISSRITTVIRVANTIKQTITDLMSHSQFHSLN*

>peptide 3 (30 aa)
MMCRRHKGRAIRRVIMNHRSDGQSPRRPFI*

>peptide 4 (31 aa)
TGLPRLLGSTNPCASAVHMEPFPSSAFKVLI*

>peptide 5 (55 aa)
MDSRHLQDQKEMKGRKTMLDSLSVLHKIKCTRRIRDYGTSKFHHDRYITQGTNLI*

>peptide 6 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDPHQRTLRPGLRLRFRSDRSALLLIGAWNLPRRPGIGRALKRHPFSGLVDSAGELLHTP*

Sequence

>CNT30628228
GACGGGGCTCCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATA
TTTGCTACTACCACCAAGATCCGCACCAACGGACGCTCCGCCCAGGCTTACGCCTAAGGTTTCGCAGCGACCGCAGCGCCCTCCTACTCATCGGGGCCTG
GAACTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGG
ATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGT
TGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAG
TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTGG
CCGTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAAC
GTAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGACCGGT
GCACACCAAACGGCGGACCGGCCGACCCAACCCAAAGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGC
GGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAAAGAGCCCGGTATTGTTATTT
ATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC
CCTAATTCTCCGTCACCCGTCACCACCGTATAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGTGTCGCCGGCACAAAGGCC
GTGCGATCCGTCGAGTTATCATGAATCATCGAAGCGACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT
TGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCAAATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTG
AATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCCTTCAGGCCGAAGGCTAAG
CATGAGCAAAAGATACATTAGCACCCATTACTCAACACAAAGCGCAACGGACTTCCGTAGGGGACATATATCTCGGAAAAGTATGGACCAAGTCCATAAT
CGATTACCAGTTCCGCATTCAAGATTTCCCTCAACACATGGACTCCCGACACTTACAAGACCAAAAGGAAATGAAAGGGCGGAAGACCATGTTAGATTCA
TTGTCAGTCTTGCACAAAATAAAATGCACAAGACGAATTAGGGACTATGGGACATCGAAATTCCATCACGATAGGTATATTACGCAGGGCACCAATCTCA
TCTGAGGGCATCTTTCACAACTCTCTGACTTAATGAACATGTAAGACCAAGCGATTGTCGCTGCCGAGACAGGGATCCAACCAACCGGGAAATACAAATC
ACAACCCACATTGTCCTCTGACTTAATGAACATGTAAGACCAAGCGATTGTCGCTGCCGAGACAGGGATCCAACCAACCGGGAAATACAAATCACAACCC
ATGCGCTCCACGTACAACACGAAACCCACATACATTAGGCTGAACCCTTCAAAACCCAAAGGTCTAAAAGAAATCAACCCACAGTAGTGTAAGCAACGTG
AACCGCT