Detailed information on CNT30628180


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531005Daucus carotaEucalyptus grandis93.1633.7896.251199reverse complement
CNT30730478Daucus carotaCorchorus capsularis93.3295.8595.841201forward
CNT3072574Daucus carotaQuercus suber89.5158.8796.611152reverse complement
CNT3037201Daucus carotaCucumis melo92.780.1796.731193reverse complement

Expression of CNT30628180

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKFQRFPGPVGQGYRLVEYISVARVRPRTSKGITDLLLPQTSVA*

>peptide 2 (48 aa)
MIRFSGLLSTSQAANRPRRRNPNTSPDHSIGRSDGRCVQRGRDVVNAS*

>peptide 3 (82 aa)
LPWVHRQGTKGPQLLARCCYMLTSHSGITGFDNDPSAGSPTETLLRLLLPLNDKVQWTSFDVASSKPPTSPQSEHFTGPFNR*

>peptide 4 (32 aa)
MKYECPRLSLLIITPIPKANVIGPKSYDVIPC*

>peptide 5 (33 aa)
PALGSQTGDQRPTVACPLLLHVNKSFWYHRIRQ*

>peptide 6 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQRNRTEIL*

Sequence

>CNT30628180
ACCTGCCTTGGGTTCACAGACAGGGGACCAAAGGCCCACAGTTGCTTGCCCGTTGTTGTTACATGTTAACAAGTCATTCTGGTATCACAGGATTCGACAA
TGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTTTCGACGTCGCAAGCAGCAAA
CCGCCCACGTCGCCGCAATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGGCAGGGACGTAGTCAACGCGAGC
TGATGACTCGCGCTTACTAGGAATTCCTCGTTTAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTTCCCGGGCCTGTCGG
CCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC
TAAAAGGCCATAGTCCCTCTAAGAAGCTGGCCGTGAAGGTGTACCTCCACATAGCTAGTTAGCAGGCTGAGGGCTCGTTCGTTAACGGAATTAACCAGAC
AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGT
TTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGA
ACCCAAAAACTTTGATTTCTCATAAGGTGCCAGTGGAGTCCTAAAAGCAACATCCACTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTA
TCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTC
ACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCCAACGTAATAGGACCGAAATCCTATGATGTTATC
CCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAATTAAGGACAGGAGCG
CATCGCCGGCAGAAGGGACGAGGCGACCGGTGCACACCAAACGGCGGACCGGCCGACCCAACCCAAAGTCCAACTACGAGCTTTTTT